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Information for unigene UN21127
| FASTA Sequence |
| Unigene ID: UN21127 | Length: 1495 |
SSR | | TCTCAAAGAGTCCGAGTTATCTTTATTCTTCTCGGATCACGATGCAGCACCCACCACCACCCGGAGGTCTCCTTCCCCACCACGTT
CCTCCTCCGTCTGCTCAACAGCACTACGGTTACCAGCAACCCCCTCCTTACGCTGCTCCTCCACCACAGATGTGGAATCCACAAGC
GCCGCCACCAAGCCAGCCTATGACCGCCGACGAGATCCGTACTCTCTGGATCGGTGACTTACAGTTCTGGATGGATGAGAGTTTCC
TCTACAGTTGTTTTGCTCACACCGGAGAGGTTCTTTCTGTTAAAGTCATCCGTAACAAGCAGACATCTCAGGTTGAAGGCTACGGT
TTCATCGAGTTTGTATCTCACGCTGCTGCTGAACGAGCTCTACAAACATACAACAGCACTCCCGTCCCTGGCCTTCCTGACCAGCT
CTTTAGATTGAACTGGGCCTCGTTGGGCTCTGGAGATAAACGTGACGATTCACCGGATTACACTATCTTCGTTGGTGATCTCGCCG
CTGATGTTACGGACTATGTCTTGCTAGAGACTTTTAAAGCATCTTATCCTTCGGTTAAAGGTGCAAAGGTTGTTATTGATAGAGCC
ACTGGGCGTACGAAGGGATATGGTTTCGTTAGGTTTTCTGATGAGAGTGAACAGATTCGTGCAATGACTGAGATGAACGGTGTTCC
TTGTTCGACAAGGCCTATGAGGATTGGGCCAGCTGCTAGCAAAAAAGGTGTGTCTGGTCAGAGAGATTCATACCAGAGTGCTGCTT
CAGGGGTTCCAACTGATAATGATCCCAATAACACAACCGTTTTTGTTGGTGGATTAGATCCCACTGTGACAGATGATCATCTAAAG
AATGTCTTTAGCCAGTATGGCGAGATTGTGCATGTGAAAATACCTGCCGGAAAGCGCTGTGGATTCGTTCAGTTTTCTGAGAAAAG
CTGTGCAGAGGAAGCAATTAGGACGTTGAATGGAACGCAGTTGGGTGGAACAACCGTCAGGCTATCATGGGGACGAAGTCCTTCAT
CTAAACAGGCGGCGGATCCGAGTCAGTATTATTACGGTGGGTATGGACAAGGTCGGGAGCATTATGGATACTCCATGCCGCAAGAT
CCTAACGCATATTACGGAGCTACCCTGGCGGGTATCAGCAGCCACCACAGTGGGGCAGCAACCACCTCAGCAGCCACACAGCAGCA
ACAAGTCGGGTTCAGCTACTAGCTGGCGAGAGTGTTCTTAGCTCCACTGTTTGTTGTTTGTCTACTTTGTCATGAAACAGACGCAG
TTGACCTCTCTCTCTCTCTCTCTCTCTCTAGGACAGTTTCTTTTGCTCAGCACTGATACTAAAGGAGTGTGAAGAGATTTGACTCT
TAATAATGCTTTGTGTGCTTCTGTTTTCTTTATTTCTTTTGCTTGCTTTAGAAGTGTAGAACATGAACGGCTATAATAAGATTTTA
AGCTTCCATTTATAAAATAGCCAATCATGTTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889883 ATRBP45B [Arabidopsis lyrata subsp. lyrata] | 1785 | 5e-197 |
| NP_172630 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1752 | 3e-193 |
| AAM64532 putative DNA binding protein [Arabidopsis thaliana] | 1736 | 2e-191 |
| NP_849641 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1412 | 8e-154 |
| XP_002518499 nuclear acid binding protein, putative [Ricinus communis] | 1254 | 2e-135 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q1RMJ7 tRNA selenocysteine 1-associated protein 1 | 389 | 1e-036 |
| O13759 RNA-binding post-transcriptional regulator csx1 | 387 | 2e-036 |
| O60176 Uncharacterized RNA-binding protein C23E6.01c | 352 | 3e-032 |
| Q00539 Protein NAM8 | 247 | 4e-020 |
| P32831 Negative growth regulatory protein NGR1 | 225 | 2e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SAB3 At1g11650 | 1752 | 2e-193 |
| Q8LBV8 Putative DNA binding protein | 1736 | 2e-191 |
| Q3EDE3 Putative uncharacterized protein At1g11650.1 | 1412 | 6e-154 |
| B9RXN0 Nuclear acid binding protein, putative | 1254 | 1e-135 |
| B9H1C9 Predicted protein | 1221 | 8e-132 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G11650.2 RNA-binding protein 45 (RBP45), putative | 1753 | 9e-196 |
| AT1G11650.1 RNA-binding protein 45 (RBP45), putative | 1412 | 3e-156 |
| AT4G27000.1 ATRBP45C; RNA binding | 1085 | 2e-118 |
| AT5G54900.1 ATRBP45A (RNA-binding protein 45A); RNA binding | 1039 | 5e-113 |
| AT1G47500.1 ATRBP47C' (RNA-binding protein 47C'); RNA binding | 869 | 3e-093 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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