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Information for unigene UN21136

FASTA Sequence
Unigene ID: UN21136Length: 786 SSRSNP
GAGAATTAAGAATCTATGATCATAACAAACATAGAGCCATAAAAACTTAGCTGCAAACATGAAGATAGCACAACTTTTCCATTACC
CGTAGAATCAGAATCAGAATCAGAATCAGAATCAGTGGGAGATAGTGATAGCTTACTAAACAGAAACATGAGAAAAAATAAAAGCA
GCCTCGTTAACAATTTAAGAGAAAGAAAAACATGAGAGAGAGATCCTTTATATAATATGCTGCCAACTTCAACTTGTTAGTCAATC
GTCTTCCTCCTCATCACTCTTATCATCAGCATCCTCCTCTTCACTAACGTCAGAGACTGACTTATCATCAGATTCCTCGTCCTCCT
TTGGACCTTCCTCCAGCTTCTTGTTGTAGGCCTTCATGGTCTTCTCATACTCAACCTTGCGCTTATCAGCCTTAGCTACGTAGGGA
GCCTTCTCAGCGTCTGATAAGGATTTCCACTTCTCTCCACCAGCTTTTCCAACAGCAGCAACAGATTTGTTGTTGGGATGATCCTT
CTTGTAAGTCTGACGGAAGTCCTCCATGAAAACGAAGAAAGCACTGGCAGGCCTCTTAGGTTTGTTAGGATCTTTACCAGCAGCTG
CTCCTTTGCTCGCCTTCGTAGGCTTCTTGTTCACAGACAGCTTTGAGTTTCTGGAGTCGGCCTTTGAATTACCTCCTTTCATGGTC
TCTCGATTCTTGATGAGGAGGAGGAGGAAGAGCTAGGGTTTGAAATTAGGGGAGGAGTAAAAGGGAATACTGCGTGTTTGTGATTC
GAGCTGACTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAF80615 F2D10.18 [Arabidopsis thaliana]5942e-059
BAJ33881 unnamed protein product [Thellungiella halophila]5942e-059
BAJ33706 unnamed protein product [Thellungiella halophila]5915e-059
XP_002890402 hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp. lyrata]5862e-058
NP_564124 high mobility group B3 protein [Arabidopsis thaliana]5843e-058

Swiss-Prot top hits (Blast detail)Scoree value
P26585 HMG1/2-like protein4748e-047
P40619 HMG1/2-like protein4424e-043
P40620 HMG1/2-like protein4254e-041
P27347 DNA-binding protein MNB1B3969e-038
P40621 HMG1/2-like protein3871e-036

TrEMBL top hits (Blast detail)Scoree value
Q9LM85 F2D10.185941e-059
P93047 At1g20690/F2D10_155842e-058
O49596 HMG protein5725e-057
A8MQZ3 Uncharacterized protein At1g20693.35636e-056
A8MQS4 Uncharacterized protein At1g20696.35628e-056

Arabidopsis top hits (Blast detail)Scoree value
AT1G20696.1 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5949e-062
AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5723e-059
AT1G20696.3 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5723e-059
AT1G20693.3 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5706e-059
AT1G20693.2 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5608e-058

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  22%
 
92  22%
 
122  22%
 
81  11%
 
72  22%

Unigene MembersMember information