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Information for unigene UN21173
| FASTA Sequence |
| Unigene ID: UN21173 | Length: 1323 |
SSR | | GGGAGAGAGCGCAGAGGAAACAAACTACTGTAGAAGCTTGAAGGAGTTACCATGGAAGCTCTTAGTGCTTCCGCTTCCGCTTCCGC
TTCCGCTTCCTTCTTCCTCCCCATCTGCAACTCTTCCTCATACAACCGACTCTTCCCTTGTTCGTCTTATTCTCCCAACAAAAAGC
TCGGAACTTTTCGGAAGAATCATCTCTCTTTCTCATCACACCTTGTATACTCCTCCTCTGCAGTCTCGACTTCTAATACTCTCTCC
CGAAACACCTACTGGATGGTAATTTTGGATAGACCTCCTCAAAGGGTTTCTTCAAAATCAGATATTGTAGATTACTATGTCGAGAT
TCTTGCCAAAGTGTTGGGAAACGAAAAGGATGCGCAGATGAGTATATATGATGCTTCCTTTGATACCCATTTCGGGTTTAGTTGTC
ATATCGACGAAGATGCTTCACGCCATCTCGCTCGCTTGCCTGAAGTATTATCTGTTAGACCTGAAGCTGATTACAGTTCCGGGAAT
AAGAATTATGGCATTGGAACCAGACAGGTGTTTCCTTGTTTGATCATGGGACAGTGAAACACTGGATGGTCCGGATAGACAAGCCA
GGAGTTGGGATTGTTACTAAAGCACAGATGGTTGATCATTGTGTTCAGTTGTTATCCAAGGTTTTATGGAATGAAAAGGATGCACA
GATGTGTCTTTATCATGTTTCTTGGGAGTCCGAATACGGTTTTTGCTGTGATCTGGATGAAAAATGCGCTGAAGAGTTGGCTGGTG
TACCTGGTGTTCTTGCTGTTGTTCCGGATAACAATTTTGAGTCACTAAACAAAGACTATTAAGGTGATAATAGTAGACAAGATTCC
AGGGAAAGTTCAGAGTCTCCTCCTGTTAAGACGAAGAAGCTGTTTATAACTGGACTGTCTTTCTACACATCTGAGAAGACATTGCG
TGCAGCCTTTGAAGGATTCGGTGAACTAGTGGAAGTAAAAATAATAATGGACAAGATATCAAAGAGATCAAAAGGTTATGCCTTTA
TAGAGTACACAACAGAGGAAGCTGCAAGCGTTGCACTAAAAGAGATGAATGGAAAGATTATTAACGGGTGGATGATAGTGGTAGAT
GTAGCCAAGACCAAACCGTTGAGACACAACAGAAGAGAGACGAGTTCTTCTGAGTTGTAGAAACTAGTTGAAAAGTGTGACAAAGC
TGATGCTTTTTTGTTCATCCATGTCTCTGAGATGATGTATAATTTAGAATTTGCTGCTTGTAATAACGATAATATAAAGGAGTCGT
TCTTGGAAAAGTCAATTTCCACACTATTTACAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566672 RNA recognition motif-containing protein [Arabidopsis thaliana] | 962 | 1e-101 |
| XP_002883278 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | 954 | 9e-101 |
| BAB01902 unnamed protein product [Arabidopsis thaliana] | 861 | 5e-090 |
| XP_002315444 predicted protein [Populus trichocarpa] | 805 | 2e-083 |
| XP_002264164 PREDICTED: hypothetical protein [Vitis vinifera] | 776 | 4e-080 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial | 181 | 2e-012 |
| P98179 Putative RNA-binding protein 3 | 170 | 3e-011 |
| Q28IQ9 Cold-inducible RNA-binding protein | 166 | 9e-011 |
| Q9DED4 Cold-inducible RNA-binding protein B | 160 | 4e-010 |
| Q9PTX2 Cold-inducible RNA-binding protein | 159 | 6e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L440 Putative uncharacterized protein | 962 | 7e-102 |
| Q9LIH1 Genomic DNA, chromosome 3, P1 clone:MFD22 | 861 | 4e-090 |
| B9HVY6 Predicted protein | 805 | 1e-083 |
| B9HL01 Predicted protein (Fragment) | 726 | 2e-074 |
| C0HFE5 Putative uncharacterized protein | 702 | 1e-071 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G20930.1 RNA recognition motif (RRM)-containing protein | 962 | 4e-104 |
| AT1G73530.1 RNA recognition motif (RRM)-containing protein | 227 | 7e-019 |
| AT1G32580.1 plastid developmental protein DAG, putative | 218 | 7e-018 |
| AT2G33430.1 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) | 211 | 5e-017 |
| AT2G35240.1 plastid developmental protein DAG, putative | 198 | 2e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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