 |
Information for unigene UN21200
| FASTA Sequence |
| Unigene ID: UN21200 | Length: 1241 |
| SNP | GGTGCCGCAATTCCGACGATCAAGTATTTGATTGACAATGGTGCTAAAGTCATCCTCTCTACTCATCTGGGGAGACCAAAGGGAGT
GACACCAAAGTTCCGTTTAGCTCCTCTGGTCCCTAGGCTGTCTGAACTTCTTGGTATTGAGGTCAAGAAAGCTGACGACTGTATCG
GTCCGGAAGTGGAGAGCTTGGTAGCCTCTCTCCCCGAAGGTGGAGTTCTGCTTCTTGAGAACGTCAGGTTTTACAAGGAGGAAGAG
AAGAACGATCCTGAGTTCGCTAAGAAGCTCGCTTCACTAGCTGACCTTTACGTCAACGATGCTTTTGGTACTGCTCACAGAGCTCA
TGCTTCCACCGAGGGAGTCACAAAGTTCTTGAAACCCTCAGTTGCTGGTTTCCTTCTTCAAAAGGAGCTTGATTACCTTGTGGGCG
CTGTTTCAACCCCAAAGAGACCATTTGCAGCCATCGTGGGTGGTTCCAAGGTGTCGTCCAAGATTGGAGTTATTGAATCGCTTCTT
GAGAAGTGTGATATCCTTCTTCTTGGTGGTGGAATGATCTTTACGTTCTACAAGGCACAAGGTCTTTCTGTTGGCTCGTCACTTGT
TGAAGAAGACAAACTTGAGTTGGCTACGTCTCTCCTTGCTAAAGCTAAGGCTAAAGGCGTCTCTCTTTTGTTGCCAACCGATGTTG
TGGTTGCTGACAAGTTCGCCCCTGATGCCAACAGCAAGGTTGTGCCAGCATCAGGTATTGAGGACGGATGGATGGGACTGGACATA
GGTCCGGACTCGGTGAAAACATTCAACGAGGCTCTGGACACAACACAGACAGTCATTTGGAATGGACCTATGGGAGTTTTCGAGAT
GGAGAAGTTTGCTGCTGGAACAGAGGCAGTTGCGAATAAACTAGCAGAGCTAAGTGAGAAAGGAGTGACAACTATAATAGGAGGAG
GAGACTCAGTGGCTGCAGTGGAGAAAGTAGGAGTTGCAGGAGTCATGAGTCACATCTCCACTGGTGGTGGAGCCAGCTTGGAGCTC
TTGGAAGGTAAAGTACTTCCCGGTGTGATCGCTCTTGATGAAGCCATCACTGTCACCGTTTAGAAAACTCACCCTTTTGATGAGAG
GCCAACTGATGTATACTTCTTTTGCTGTAAATCATCATCATCTACCTATTCAAGACTATGACCTTTTTTTTTAAATGAGTACTTGT
TGGTCTCAAAAGAACTTTACCAATATTAAAATTTCAG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187884 phosphoglycerate kinase 1 [Arabidopsis thaliana] | 1770 | 2e-195 |
| AAB60303 phosphoglycerate kinase [Arabidopsis thaliana] | 1770 | 2e-195 |
| XP_002884926 hypothetical protein ARALYDRAFT_478641 [Arabidopsis lyrata subsp. lyrata] | 1768 | 3e-195 |
| XP_002891879 hypothetical protein ARALYDRAFT_474689 [Arabidopsis lyrata subsp. lyrata] | 1724 | 4e-190 |
| NP_176015 phosphoglycerate kinase [Arabidopsis thaliana] | 1722 | 7e-190 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P50318 Phosphoglycerate kinase, chloroplastic | 1755 | 5e-195 |
| Q42961 Phosphoglycerate kinase, chloroplastic | 1656 | 1e-183 |
| P29409 Phosphoglycerate kinase, chloroplastic (Fragment) | 1648 | 1e-182 |
| P12782 Phosphoglycerate kinase, chloroplastic | 1633 | 6e-181 |
| Q42962 Phosphoglycerate kinase, cytosolic | 1546 | 8e-171 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LD57 Phosphoglycerate kinase | 1770 | 1e-195 |
| Q9C7J4 Phosphoglycerate kinase | 1722 | 5e-190 |
| Q2XPV6 Phosphoglycerate kinase | 1670 | 5e-184 |
| Q2V9B3 Phosphoglycerate kinase | 1663 | 3e-183 |
| O81394 Phosphoglycerate kinase | 1662 | 4e-183 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G12780.1 PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase | 1771 | 6e-198 |
| AT1G56190.1 phosphoglycerate kinase, putative | 1723 | 2e-192 |
| AT1G56190.2 phosphoglycerate kinase, putative | 1723 | 2e-192 |
| AT1G79550.1 PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase | 1546 | 7e-172 |
| AT1G79550.2 PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase | 1546 | 7e-172 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
