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Information for unigene UN21255

FASTA Sequence
Unigene ID: UN21255Length: 671 SSR 
GGATCTGCGATCAATTGTGTTCTCACACTTTCCCTTGGTTTTCTCGGCGGCTTTCTCTCATCTCCTTTTTCCTTCGAATCGTTTCT
TTCCATTAATTCTCTGAGATTAAATCTTCCTCCTTTCTGCGGACCCCTATGTCGGACAAAGGTCGTCCCTTGCCCAAGTTTGGTGA
ATGGGATGCGAACGATCCAGCATCAGCTGAAGGTTTCACAGTCATATTCAACAAAGCTAGGGATGAGAAGAAGACCGGTGGCAAAC
CCGGTTCACCTGGTAAATCCACTGATGGTCATGCTAAGTCCGGAGGAGGAGGAGGAGATCCCAGTAAACCCCAGCCCAAAAAATGG
CTTTGCTGCATGCAATCTCCAGCTGTGGACTCCTGAATGACCACAAAGATGGATTTTGCTTTGCTTCCCCCCCAAAGAAAAAGTCA
CATTGCTTAGAGATCTATAGCAATGATATTTTATGTTTTTTATTGTCTTTCTTGAAAGTACCCACAACAACAAAAAAAGGTTCCTA
AGATGAGTTGGAGCAACCCACTTTAGTATCACGATTATGATTCCATTTTCTTTGAAAGTTGTTTGTTCTTCTTTAAAAAAATGCTG
TAAAATCGTGTTGCCACTGTATCTATTATGTAATGCTTCTCATATGGGTCGGTTTTTTGGTTTCATTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAB86938 NOI protein [Arabidopsis thaliana]4042e-037
NP_001190552 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]3952e-036
NP_200396 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]3682e-033
NP_001154782 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]3593e-032
XP_002864413 hypothetical protein ARALYDRAFT_495666 [Arabidopsis lyrata subsp. lyrata]3485e-031

Swiss-Prot top hits (Blast detail)Scoree value
Q8GYN5 RPM1-interacting protein 41224e-006

TrEMBL top hits (Blast detail)Scoree value
O22633 NOI protein4041e-037
B9GFY3 Predicted protein (Fragment)3287e-029
B9I1B3 Predicted protein3224e-028
C6SWS8 Putative uncharacterized protein3072e-026
C6SWK6 Putative uncharacterized protein3028e-026

Arabidopsis top hits (Blast detail)Scoree value
AT5G55850.1 NOI3681e-035
AT5G55850.2 NOI3591e-034
AT2G04410.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: NOI (TAIR:AT5G55850.1); Has 141 Blast hits to 140 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).2586e-023
AT5G63270.1 nitrate-responsive NOI protein, putative1762e-013
AT5G40645.1 nitrate-responsive NOI protein, putative1663e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  67%
 
81  33%

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