 |
Information for unigene UN21259
| FASTA Sequence |
| Unigene ID: UN21259 | Length: 673 |
| SNP | GTAATAGCTACGAATCTTGAAACCTCGAAACCAAAAAACCCTAAGCAGCAGAGATCGAAGCAGAAGGGAGGAGCGATTTGTTTTCA
TCCCAATCCTCGACGATTCAAATCTCTTCGTTCCCTAAAACCATGGCTACGATACCGGTTAACCCGAAGCCATTCTTGAACAATTT
GACCGGAAAGACGGTTATTGTTAAGCTTAAATGGGGAATGGAATACAAAGGTTTCCTTGCCTCTGTTGACTCCTACATGAACTTGC
AGCTGGGAAACACCGAGGAATATATCGATGGACAATTGACAGGAAACCTTGGAGAGATCTTGATCAGATGCAACAACGTTTTGTAT
GTCCGAGGTGTGCCAGAAGATGAAGAACTCGCGGACGCTGAACAAGACTAGCCTGGTACCAATGACGTAGAGATCGCTAGTCTGTT
TGAAGTCGTGTCGTGTATTCTATGAGCGTTTTAAACCCATTTTACTCTTCTTAAATATTTTTAAGTTGTTTGATACCTTAAAACCA
GAACGTTACAAGCGGTTTAGCTCTTTATGAGAGAAATCGAACTTCTTTCTGGCTTTCTGTTATTGAAAAGGTATGCTTGTCGTTTT
TTAACTATCTTTATTAGACCTCAATCTACGACCCACTATGTGGCGCTATATGAGTAATCCATTGGCCACAT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_194751 small nuclear ribonucleoprotein F [Arabidopsis thaliana] | 452 | 4e-043 |
| NP_001190872 small nuclear ribonucleoprotein F [Arabidopsis thaliana] | 444 | 4e-042 |
| XP_002325051 predicted protein [Populus trichocarpa] | 438 | 2e-041 |
| XP_002530746 small nuclear ribonucleoprotein f, putative [Ricinus communis] | 437 | 2e-041 |
| XP_002457240 hypothetical protein SORBIDRAFT_03g003900 [Sorghum bicolor] | 411 | 3e-038 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SUM2 Probable small nuclear ribonucleoprotein F | 452 | 2e-044 |
| Q3T0Z8 Small nuclear ribonucleoprotein F | 345 | 6e-032 |
| P62306 Small nuclear ribonucleoprotein F | 345 | 6e-032 |
| P62307 Small nuclear ribonucleoprotein F | 345 | 6e-032 |
| P62321 Small nuclear ribonucleoprotein F | 345 | 6e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WT08 SnRNP Sm protein F-like | 452 | 3e-043 |
| B9ILY6 Predicted protein | 438 | 1e-041 |
| B9SXM7 Small nuclear ribonucleoprotein f, putative | 437 | 2e-041 |
| C5XMR4 Putative uncharacterized protein Sb03g003900 | 411 | 2e-038 |
| C6SWM0 Putative uncharacterized protein | 410 | 2e-038 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G30220.1 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) | 453 | 2e-045 |
| AT2G14285.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species: Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | 309 | 8e-029 |
| AT2G43810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 178 | 1e-013 |
| AT2G43810.2 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 178 | 1e-013 |
| AT3G59810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 175 | 3e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
