Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN21299

FASTA Sequence
Unigene ID: UN21299Length: 692 SSR 
TCTACATCGGAAACATACCAAGAACCGTAACTAACGAACAGCTCACCAAACTCGTCGAAGAGCACGGCGCCGTTGAACAAGTCCAG
GTGATGTATGATAAGTACTCAGGAAGAAGCCGTAGGTTTGGTTTCGCTACAATGAAATCAGTTGAAGATGCCAATGCTGTCATTGA
GAAGTTGAACGGCACTACAATTGAAGGACGTGAGGTGAAGGTTAATATTACAGAGAAGCCTATAGAATTATCATCATCATCATCGT
CTCCTGATTTGTCGCTGCTTCAGTCTGAAGATGCAGCTTTTGTGGATAGTCCTTACAAAGTGTATGTAGGGAATCTAGCAAAGAGT
GTTACTAAAGAGATGCTTGAGAGTTTGTTTTCTGAGAAAGGGAAAGTTCTGAGTGCTAAGGTTTCGAGAGTGCCTGGTACTTCCAA
ATCTACTGGGTTTGGGTTTGTTACGTTTTCTTCTGATGAAGATGTCGATGCTGCTATTTTGGCTCTTAACAACTCTTTGCTGGAAG
GACAGAAGATACGGGTGAACAAGGCGTAGTGTGTGAGAGAGGGCGAGTCTTTTGGCAGAATCGTTTTTGTGTTGTATTGAGGAGTT
TGTAATGCAAAACATTTAGAGCATAGTATCATTATCTTTGTAATCATTTTAAGTTGAGAAAAAAAAATGAAAACATTAAAGTTTAT
TTCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_566958 RNA recognition motif-containing protein [Arabidopsis thaliana]8056e-084
BAH19693 AT3G52150 [Arabidopsis thaliana]8002e-083
XP_002876128 hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp. lyrata]7609e-079
CAB41335 putative protein [Arabidopsis thaliana]7473e-077
XP_002513193 ribonucleoprotein, chloroplast, putative [Ricinus communis]6864e-070

Swiss-Prot top hits (Blast detail)Scoree value
P82277 30S ribosomal protein 2, chloroplastic6493e-067
Q08935 29 kDa ribonucleoprotein A, chloroplastic3421e-031
Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic3384e-031
P49313 30 kDa ribonucleoprotein, chloroplastic3375e-031
P19684 33 kDa ribonucleoprotein, chloroplastic3294e-030

TrEMBL top hits (Blast detail)Scoree value
Q8VYM4 Putative uncharacterized protein At3g521508054e-084
B9DG26 AT3G52150 protein8001e-083
Q9SUZ0 Putative uncharacterized protein F4F15.2607472e-077
B9RHH4 Ribonucleoprotein, chloroplast, putative6862e-070
B9HNK5 Predicted protein6683e-068

Arabidopsis top hits (Blast detail)Scoree value
AT3G52150.1 RNA recognition motif (RRM)-containing protein8062e-086
AT3G52150.2 RNA recognition motif (RRM)-containing protein8062e-086
AT3G52380.1 CP33; RNA binding3529e-034
AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative3384e-032
AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding1961e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  33%
 
62  67%

Unigene MembersMember information