RadishBase

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Information for unigene UN21333

FASTA Sequence

Unigene ID: UN21333	Length: 824	SSR
GGGTTCACGTTTCTTCCTCCTCACACCGGCATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTGAAGAAAGCAAGCAGGAAAC ATAGAGATTCTTTCTTGTCCTTTCAGTGAGGTTTTTGGGTTTAGCGAATCGATTGATTTAGAAGGATGACGAGTTCTGCCGAGTGT TGGGAATCCTCCGGTGAGAGGAAGAAGGTGCTTGAGAAGAAGCCGAGCTTCTCGCAGACATGTAGTCGATTGAGTCGTTATCTCAA GGAGAAGGGTAGCTTCGGAGATCTCAGCTTAGGGTTGACATGCAACCCCGACCTCCATGGAGCTTTTGGTGTGTCACGTGAGCCCA CGATGATGAATCTCTTCCCTTCTTCGGCTGCTCAAGATGTTAAACCACCGAAGAGTGATGTGATTCCTCGCCAATCAAGCTTTTCT TCTTCCTCTTCCCCTGGAGGAGCCAAGGAAGAAGTCGATAAGATCATACACATCAAATCTGTGAAGGTGGAGTCTCAATCTGCGCC ATTGACCATATTCTACGGCGGTCAAGTTATGGTGTTTGATGATTTTCCTGCTGAGAAAGCCAAGCAAGTCATTGACTTGGCTCACA AAGAAAGTGCTAAAAGCTTCACATCTGAACTGAACAGTAGCCAGATTGCTTATACTCAAAACATTGCCAATAATCATAAAGAGATT GCTTCCACTACCCCAAATCCAGTTTCTATTCATGTGAAACGGCTGCACCAGAGCCAATCCAAGCCAACAAATCCTCTTTAGCTTGC GGTACGACTCCCAATTGCTAGAAGAGCTCACTTCATCGATCCTTGAGAGA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002889001 hypothetical protein ARALYDRAFT_476633 [Arabidopsis lyrata subsp. lyrata]	643	5e-065
BAJ33919 unnamed protein product [Thellungiella halophila]	630	2e-063
NP_565096 protein TIFY 10B [Arabidopsis thaliana]	561	2e-055
AAM64554 unknown [Arabidopsis thaliana]	552	2e-054
NP_564075 protein TIFY 10A [Arabidopsis thaliana]	446	3e-042

Swiss-Prot top hits (Blast detail)	Score	e value
Q9S7M2 Protein TIFY 10B	561	7e-057
Q9LMA8 Protein TIFY 10A	446	2e-043
Q9C9E3 Protein TIFY 11B	206	1e-015

TrEMBL top hits (Blast detail)	Score	e value
B9MT14 Predicted protein	301	2e-025
C6T4J6 Putative uncharacterized protein	300	2e-025
C6TAX9 Putative uncharacterized protein	295	8e-025
C6TEN6 Putative uncharacterized protein	295	8e-025
A9PIL0 Putative uncharacterized protein	286	8e-024

Arabidopsis top hits (Blast detail)	Score	e value
AT1G74950.1 TIFY10B	561	7e-058
AT1G19180.1 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding	446	1e-044
AT1G19180.2 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding	222	1e-018
AT1G72450.1 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	206	1e-016
AT1G17380.1 JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)	112	8e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			25%


12	3			75%

Unigene Members	Member information