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Information for unigene UN21336
| FASTA Sequence |
| Unigene ID: UN21336 | Length: 1380 |
SSR | SNP | GGGGGAATCTGAAAAATTTTTTGAATGAAATAACAATACAAAACACACCTTTCATATCACAGGTATTTTTCCTGGATCAAGAATAT
TTTTAGAGTATATTATACATAATCCTGGCTTTACCACACCCAAACATAAATGGTTTGACCATATAAAAACCAACAACAAATAGAAT
CACGAAGTAGACAGATATGTGTTTTTCCTTATGTGACCAATGATCATATTGATCATCAATCTTTTTCTTGCTATAAACCGATCATC
AAGAAAGTTTTTTGCAACAAAAAGTTCATGCTTACTTTCTGGTAGATGGAAACAAGTGAAAGATCTTTTGGTGATGTGTCATTGAG
GAAGAACAGGAGGTGCGACGGCTCTGGTGTTGTAAGATCTACAGTGTCCACATTTCTGTCCTATTATGTGGAAATAAACTTCTGTT
GTGTCGTTACAGTCGTTGCATAGTATCCACACCTTCTTGTCGCGGTAATCTGAAGGCATAGAAGTGGCTTCAATCTCTTCATCCAT
TCTCTGCCATGTTTTTGACATATCAATCACTGACCTCGAGCAAATAGGACAGCAAAATTTGTCACGCTTGATCATCTCATGGTAGC
ATTCACAGTGCATAGTGTGTCCACATTTCATCACTGTTGTTTCTTTAAGAGAGTCAAAGAGATACTCGTAACAAATGGGACAGTGA
TGTCTCATTGAATCCTCAACGCAGCGATGGTTGTTGCGCAGACCAGTCGCATAACAAGATCCACATTTCTTGCAATGGAAGAAGTT
CTCACGTCCACCAACTCTGCAGATTCCACAGTCATCACAATGGAACTGTTGTTTCTCAGTATTATCATCATAGAACTTGCAGATAT
TGCAAAAGTATTCTCCCATGTTGACACCACAGTTGGAGCATATTTGAGCTACCGGTTGCTCTGTATCGCAAACAGAACAAATCACT
TGTTTAACGTCTTGACGAACAAGCTCATGACGGTCGTAAATATTGCGCAGAGTGCTAGTGAACTCGTTATGGCAATGGCGACAATC
GAAGACTTCGTTGCAACAAGGAGCTCTGATCTGGCATCTCCTCCTGTAATGTTGACACCCGAAACCCATCTTGCCAAAATGAAGTC
GATCATTGGGTGAGGCTTCCATGAGAACAGGAGGAGAGAAGCTGATATAGATAGAGAGAGAGAGATGTGAAAAGTTTAACTCTTTC
TCTCTCTAACTATATATTATATTGAGTGAAGAAGAAGCGGATTTGGATTGGATTGGATTGGACTGAATGGGCCTTGAAGCTGAAAG
ATTTATCGGAATCGCAAGGCTGATAATGAAAACAGAGACCCCACTTCTTGTTCTCCAACCTTCCTATTTGCAGGGAATGACGAGAG
AAAG
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002871827 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1483 | 4e-162 |
| NP_197366 ring finger and CHY zinc finger domain-containing protein 1 [Arabidopsis thaliana] | 1468 | 2e-160 |
| ACU23903 unknown [Glycine max] | 1347 | 3e-146 |
| ACU18576 unknown [Glycine max] | 1343 | 7e-146 |
| XP_002312758 predicted protein [Populus trichocarpa] | 1325 | 9e-144 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q96PM5 RING finger and CHY zinc finger domain-containing protein 1 | 643 | 5e-066 |
| Q9CR50 RING finger and CHY zinc finger domain-containing protein 1 | 643 | 5e-066 |
| O14099 Uncharacterized RING finger protein C2F3.16 | 587 | 1e-059 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8VZK0 Putative uncharacterized protein At5g18650 | 1468 | 2e-160 |
| C6TLW1 Putative uncharacterized protein | 1347 | 2e-146 |
| C6T9S4 Putative uncharacterized protein | 1343 | 5e-146 |
| B9HMP9 Predicted protein | 1325 | 6e-144 |
| B9RT06 Zinc finger protein, putative | 1300 | 5e-141 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G18650.1 zinc finger (C3HC4-type RING finger) family protein | 1469 | 7e-163 |
| AT3G62970.1 protein binding / zinc ion binding | 983 | 2e-106 |
| AT5G22920.1 zinc finger (C3HC4-type RING finger) family protein | 909 | 6e-098 |
| AT5G25560.1 zinc finger (C3HC4-type RING finger) family protein | 883 | 6e-095 |
| AT5G25560.2 zinc finger (C3HC4-type RING finger) family protein | 768 | 1e-081 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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