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Information for unigene UN21361
FASTA Sequence |
Unigene ID: UN21361 | Length: 1346 |
SSR | SNP | GGCACTTTCAACGCCTCACGAGAGACACAAAGAAATATCATCTCAGAGCTTCTTCTAGGGCTTCGACGCGACAACGGCTGCCAACT
ACTTCAGTTTCATAACTGCACAGGAATCATGAAGCCAGTCTTCTGTGGGAACTTTGAGTATGATGCGCGTGAGGGTGATCTTGAAA
GGCTTTTCAGGAAATACGGAAGGGTTGAGAGGGTTGATATGAAAGCTGGGTTTGCTTTCGTGTACATGGAAGATGAGAGGGATGCT
GAAGATGCAATCCGAGCACTTGACCGCATTGAATTTGGACGCAAGGGACGCAGACTCCGTGTTGAGTGGACAAAGGGTGAGCGTGG
AGGCGATAGAAGATCTGGTGGTGGTGGTGGTTCAAGGAGATCCTCATCCTTGAGGCCTTCCAAGACTCTGTTTGTGATAAACTTTG
ATGCGGACAATACTCGGACCCGGGATCTAGAGAGGCACTTTGAACCATATGGCAAAATTGTAAACGTTAGGATCAGGAGGAACTTT
GCATTTGTCCAGTACGAGGAGCAAGAGGATGCCACTCGAGCTCTTGAGGCTACAAACAACAGTAAGCTGATGGATAAGGTGATCTC
GGTGGAGTATGCAATGAAAGATGATGATGCAAGAGGGAACGGACACAGTCCCGAAAGACGCCGTGATAGGTCACCAGAAAGGAGAA
GGTGATCACCTAGTCCTTACAAGAGAGAGAGAGGGAGCCCTGATTACGGCCGAGGGGGTAGCCCCGTTGCTGCATACAAAAGGGAA
AGGACGAGTCCTGACTATGGCAGAAGACGTAGCCCGAGCCCTTACAAGAGAACAAGGCGTAGTAGTCCCGAGTATGGTCGCGACCA
CCGCCACAGAGGCAATGAGAGCCCCCGGAGGAGGGAGAGAGCTGCAAGCCCCAGGTACAGTCGAAGTCCTGACAACAAGAGAGAGA
GGGTGAGTCCTGATCGCAGCCCGTTTAAGAAGGAGAGTTTGAAGAACGGAGATGGTGAAGTTGATAGCCCAAGGAGGGAGAGATCA
AGGTCTAGCCCTGAGAATGGGCAAGTTGAGAGCCCTGGCTCTATAGGGAGAAGGGACAGTGATGGTGGCTACGATGGTGCAGATAG
CCCCCCTATGCAGAAGAGCCGGTCTCGTTCGCCTCCAGCTGAAGAGTGAATGAAAAGTGGATACATCAAAGTAGGGTGGTGTAGTC
AAACTCTCTGTGTCATGTGTTGTGTTTAGTTTCTTTGCTATTTGAAACATTCGAACTGGGATCTCTTTTATTGTCGGATTGAAAAA
CTCTTCTCTTGTGTGCTTAAAATATGCCATGTTACTGAATTATTCGTTTTGAAATC
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GenBank top hits (Blast detail) | Score | e value |
XP_002869670 hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp. lyrata] | 1605 | 3e-176 |
NP_194280 arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana] | 1592 | 9e-175 |
AAB18813 splicing factor At-SRp40 [Arabidopsis thaliana] | 1583 | 1e-173 |
CAB81360 splicing factor At-SRp40 [Arabidopsis thaliana] | 1583 | 1e-173 |
NP_001078447 arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana] | 1407 | 3e-153 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P92965 Arginine/serine-rich-splicing factor RSP40 | 1592 | 4e-176 |
P92966 Arginine/serine-rich-splicing factor RSP41 | 1253 | 8e-137 |
P92964 Arginine/serine-rich-splicing factor RSP31 | 727 | 8e-076 |
Q10021 Probable splicing factor, arginine/serine-rich 5 | 184 | 7e-013 |
Q23121 Probable splicing factor, arginine/serine-rich 1 | 164 | 2e-010 |
TrEMBL top hits (Blast detail) | Score | e value |
Q9M0K9 Splicing factor At-SRp40 (Fragment) | 1583 | 7e-174 |
A8MRZ9 AT4G25500 protein | 1407 | 2e-153 |
B9DH58 AT4G25500 protein | 1403 | 5e-153 |
Q3E9W5 Putative uncharacterized protein At4g25500.2 | 1369 | 5e-149 |
Q3E8C5 Putative uncharacterized protein At5g52040.2 | 1260 | 2e-136 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT4G25500.1 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding | 1593 | 3e-177 |
AT4G25500.3 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding | 1408 | 8e-156 |
AT4G25500.2 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding | 1375 | 5e-152 |
AT5G52040.2 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding | 1261 | 9e-139 |
AT5G52040.1 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding | 1254 | 6e-138 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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