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Information for unigene UN21361

FASTA Sequence
Unigene ID: UN21361Length: 1346 SSRSNP
GGCACTTTCAACGCCTCACGAGAGACACAAAGAAATATCATCTCAGAGCTTCTTCTAGGGCTTCGACGCGACAACGGCTGCCAACT
ACTTCAGTTTCATAACTGCACAGGAATCATGAAGCCAGTCTTCTGTGGGAACTTTGAGTATGATGCGCGTGAGGGTGATCTTGAAA
GGCTTTTCAGGAAATACGGAAGGGTTGAGAGGGTTGATATGAAAGCTGGGTTTGCTTTCGTGTACATGGAAGATGAGAGGGATGCT
GAAGATGCAATCCGAGCACTTGACCGCATTGAATTTGGACGCAAGGGACGCAGACTCCGTGTTGAGTGGACAAAGGGTGAGCGTGG
AGGCGATAGAAGATCTGGTGGTGGTGGTGGTTCAAGGAGATCCTCATCCTTGAGGCCTTCCAAGACTCTGTTTGTGATAAACTTTG
ATGCGGACAATACTCGGACCCGGGATCTAGAGAGGCACTTTGAACCATATGGCAAAATTGTAAACGTTAGGATCAGGAGGAACTTT
GCATTTGTCCAGTACGAGGAGCAAGAGGATGCCACTCGAGCTCTTGAGGCTACAAACAACAGTAAGCTGATGGATAAGGTGATCTC
GGTGGAGTATGCAATGAAAGATGATGATGCAAGAGGGAACGGACACAGTCCCGAAAGACGCCGTGATAGGTCACCAGAAAGGAGAA
GGTGATCACCTAGTCCTTACAAGAGAGAGAGAGGGAGCCCTGATTACGGCCGAGGGGGTAGCCCCGTTGCTGCATACAAAAGGGAA
AGGACGAGTCCTGACTATGGCAGAAGACGTAGCCCGAGCCCTTACAAGAGAACAAGGCGTAGTAGTCCCGAGTATGGTCGCGACCA
CCGCCACAGAGGCAATGAGAGCCCCCGGAGGAGGGAGAGAGCTGCAAGCCCCAGGTACAGTCGAAGTCCTGACAACAAGAGAGAGA
GGGTGAGTCCTGATCGCAGCCCGTTTAAGAAGGAGAGTTTGAAGAACGGAGATGGTGAAGTTGATAGCCCAAGGAGGGAGAGATCA
AGGTCTAGCCCTGAGAATGGGCAAGTTGAGAGCCCTGGCTCTATAGGGAGAAGGGACAGTGATGGTGGCTACGATGGTGCAGATAG
CCCCCCTATGCAGAAGAGCCGGTCTCGTTCGCCTCCAGCTGAAGAGTGAATGAAAAGTGGATACATCAAAGTAGGGTGGTGTAGTC
AAACTCTCTGTGTCATGTGTTGTGTTTAGTTTCTTTGCTATTTGAAACATTCGAACTGGGATCTCTTTTATTGTCGGATTGAAAAA
CTCTTCTCTTGTGTGCTTAAAATATGCCATGTTACTGAATTATTCGTTTTGAAATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869670 hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp. lyrata]16053e-176
NP_194280 arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]15929e-175
AAB18813 splicing factor At-SRp40 [Arabidopsis thaliana]15831e-173
CAB81360 splicing factor At-SRp40 [Arabidopsis thaliana]15831e-173
NP_001078447 arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]14073e-153

Swiss-Prot top hits (Blast detail)Scoree value
P92965 Arginine/serine-rich-splicing factor RSP4015924e-176
P92966 Arginine/serine-rich-splicing factor RSP4112538e-137
P92964 Arginine/serine-rich-splicing factor RSP317278e-076
Q10021 Probable splicing factor, arginine/serine-rich 51847e-013
Q23121 Probable splicing factor, arginine/serine-rich 11642e-010

TrEMBL top hits (Blast detail)Scoree value
Q9M0K9 Splicing factor At-SRp40 (Fragment)15837e-174
A8MRZ9 AT4G25500 protein14072e-153
B9DH58 AT4G25500 protein14035e-153
Q3E9W5 Putative uncharacterized protein At4g25500.213695e-149
Q3E8C5 Putative uncharacterized protein At5g52040.212602e-136

Arabidopsis top hits (Blast detail)Scoree value
AT4G25500.1 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding15933e-177
AT4G25500.3 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding14088e-156
AT4G25500.2 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding13755e-152
AT5G52040.2 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding12619e-139
AT5G52040.1 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding12546e-138

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
123  23%
 
63  23%
 
113  23%
 
82  15%
 
102  15%

Unigene MembersMember information