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Information for unigene UN21438

FASTA Sequence
Unigene ID: UN21438Length: 1371  SNP
GCTGCGGAACCGCCGAAGAAGGCGACCAAGAAGAATAGGGTTTGGGATGATGCGGCTCCTAAACAGGTGAAGTTGGACTTTACTGA
TTCCGTTGATGAGAGTGGGAACGGTGATCATGTGGATGTTGCGGCTGCTGACCAAGGAGAGAGTATGATGGATAAGGAAGAGGTTT
TTAGCAGTGATGGTGAAAGTGAAGATGATGATGATGACGAACCAAGAAGTGATGAGAAGCCTGAGGCTAAGAAGAAGGGATGGTTT
TCTTCGGTTTTCCAGAGTATTACTGGGAAGGCGAATCTTGAAAGGACAGACCTTGAACCGGCCTTGAAAGCTCTGAAGGAACGGCT
CATGACCAAGAATGTGGCTGAAGAGATAGCTGAGAAGCTTTGTGAATCAGTGGAAGCAAGTCTTGAAGGAAAGAAGTTGGCATCGT
TCACGAGGATCTCCTCAACCGTTCAGGGAGCAATGGAGGATGCTCTGATTCGCATATTGACTCCGAGACGCTCCATTGATATTATG
CGAGACGTTCATGCTGCCAAAGAACAGAGGAGGCCTTATGTGGTCGTGTTTGTTGGAGTCAACGGAGTTGGGAAATCCACCAATCT
TGCCAAAGTTGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGATGGCTGCTTGTGACACATTCCGTTCTGGTGCTGTTGAGC
AGTTGAGGACTCATGCTCGTAGGTTACAGATACCGATCTTTGAGAAGGGTTATGAGAAGGATCCAGCAGTAGTTGCAAAGGAAGCC
ATACAGGAAGCAACTCGGAATGGATCGGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAACCTTTGATGAGAGC
TCTCTCAAAGCTCATTAACCTCAATAAACCAGACCTGGTCTTGTTTGTCGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGC
TCTCAAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGATTGATTGATGGAATCTTACTGACAAAGTTCGAT
ACCATTGACGATAAGGTTGGAGCAGCGTTATCGATGGTTTACATATCGGGAGCACCGGTTATGTTCGTGGGTTGTGGCCAGTCTTA
CACTGACCTGAAGAAGCTCAATGTCAAAGCCATAGTCAAGACACTTCTCAAATGATCTTCTCATCACCATCATCATCACTATCTTC
ATCAACCAACCATCATTTCTATCAATGTCTTATCCATCATACTTTATCTTGAGTTTTTGTTATGGTTTTTGATGTTGTTTCCTTAA
AACTCGAAAATACTATTTCGTTGGAGTCGCTACTATCCCATCCCATGTCTTTATAATATGATGCAACTTCTGTTTTGAACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_194789 signal recognition particle receptor subunit alpha [Arabidopsis thaliana]18267e-202
XP_002867337 signal recognition particle receptor alpha subunit family protein [Arabidopsis lyrata subsp. lyrata]18213e-201
XP_002309350 predicted protein [Populus trichocarpa]16781e-184
XP_002278056 PREDICTED: hypothetical protein [Vitis vinifera]16368e-180
XP_002529394 signal recognition particle receptor alpha subunit, putative [Ricinus communis]16295e-179

Swiss-Prot top hits (Blast detail)Scoree value
Q54ZR7 Signal recognition particle receptor subunit alpha9652e-103
Q9DBG7 Signal recognition particle receptor subunit alpha9501e-101
Q57739 Probable signal recognition particle protein MJ02915522e-055
Q3MHE8 Signal recognition particle receptor subunit alpha5281e-052
P08240 Signal recognition particle receptor subunit alpha5281e-052

TrEMBL top hits (Blast detail)Scoree value
Q9M0A0 AT4g30600/F17I23_6018265e-202
B9HB30 Predicted protein16787e-185
B9STS5 Signal recognition particle receptor alpha subunit, putative16293e-179
A2YWB0 Putative uncharacterized protein15424e-169
B9G1G0 Putative uncharacterized protein15424e-169

Arabidopsis top hits (Blast detail)Scoree value
AT4G30600.1 signal recognition particle receptor alpha subunit family protein18272e-204
AT1G48900.1 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)3334e-031
AT1G48900.2 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)3334e-031
AT1G15310.1 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding3325e-031
AT5G03940.1 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding3253e-030

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  33%
 
113  25%
 
84  33%
 
101  8%

Unigene MembersMember information