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Information for unigene UN21444
| FASTA Sequence |
| Unigene ID: UN21444 | Length: 1846 |
| SNP | GGGCCCTCTCCCCCTCACCAAACTCCCTGTTAATGTTCTTGTAAAAGCCGTCATTACAAGACCCCCCAAGACCCCTTGATTACTCG
AACAAATAGAGTCCTGTAAAAAAATTCGATTTGCTTTCAATCTCAATGGCGCAAGCTAGCAAGATCTGCCACCAGAACCCATGTGT
TATCTCCAATCTCCTCTCCAAATCAAACCAAAGCAAATCACCCTTCTCCGTCTCGCTGAAGACAACGCAGCAGCCGCCTCGAGCTT
CCTCGTGGGGATTGAAGAAGAGTGTGACGTTGGTAACTCGTCCCACCGTCAAGGTAACAGCTTCCTCCGTTTCCACGGCGGAGAAA
GCTTCGGAGATCGTGCTTCAACCAATCAGAGAAATCTCGGGTCTTATCAAGCTACCCGGATCCAAATCTCTCTCCAATCGGATCCT
TCTTCTCGCCGCTCTATCTGAGGGAACTACTGTAGTGGACAACTTGTTGAACAGTGATGACATCAACTACATGCTTGATGCGTTGA
AGAAGCTGGGGCTTAACGTGGAACGTGACAGTGTAAACAACCGTGCTGTTGTCGAAGGATGCGGTGGGATCTTCCCTGCTTCCTTG
GATTCCAAGGGTGATATCGAGCTGTACCTTGGGAATGCAGGAACTGCCATGCGTCCACTCACCGCTGCTGTTACTGCTGCAGGTGG
TAACGCAAGTTATTTTCTTGATGGAGTGCCTAGGATGAGGGAAAGACCTATAGGAGATTTGGTTGTTGGTCTCAAGCAGCTTGGTG
CTGATGTTGAGTGTACTCTGGGAACTAACTGCCCTCCTGTTCGTGTCAATGCTAACGGTGGCCTTCCCGGTGGAAAGGTGAAGCTT
TCTGGTTCAATCAGTAGTCAGTACTTGACTGCACTCTTCATGGCAGCTCCTTTAGCTCTCGGAGACGTGGAGATCGAGATCGTTGA
TAAACTGATCTCTGTTCCTTACGTTGAGATGACGTTGAAGTTGATGGAGCGTTACGGTGTGAGTGCTGAGCATAGTGATAGCTGGG
ATCGTTTCTTTGTCAAGGGTGGTCAGAAATACAAGTCGCCTGGTAATGCTTATGTAGAAGGTGATGCTTCGAGTGCTAGCTACTTC
TTGGCTGGTGCTGCCATTACCGGTGAAACTGTCACTGTTGAAGGCTGTGGAACAACTAGTCTGCAGGGAGATGTGAAATTCGCAGA
GGTTCTTGAGAAAATGGGATGTAAAGTGTCGTGGACAGAGAACAGTGTGACTGTGACTGGACCGTCAAGAGATGCTTTTGGAATGA
GACACTTGCGTGCTGTTGATGTCAACATGAACAAAATGCCTGATGTAGCCATGACTCTTGCAGTTGTTGCTCTCTTTGCTGATGGT
CCAACCACCATTAGAGATGTGGCTAGCTGGAGAGTTAAGGAGACAGAAAGAATGATTGCCATTTGCACTGAGCTTCGAAAGCTTGG
AGCTACAGTGGAAGAGGGTTCAGATTATTGTGTGATCACTCCACCAGCAAAGGTGAAACCTGCGGAGATTGATACATATGATGATC
ATAGAATGGCAATGGCGTTCTCTCTTGCAGCTTGTGCTGATGTTCCAGTGACCATCAAGGATCCTGGTTGCACAAGGAAGACTTTC
CCTGACTACTTCCAAGTCCTTGAAAGTATCACAAAGCACTAAAAAAGATCCATCCAAATGTGAGATTGTGTTTCTTCCTCTCTGTT
GCCACTGTAACATTTATCAGAAGAACAAAAGAGTATTAAGATTTGTTTGCTTTGTACTGAAACTGATTTGAGATGCAATCGTTGAA
TCAGTTTTTTTTGGGCCTTATTATTAAAGAGCTGTTTGCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| P17688 RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Flags: Precursor | 2456 | 9e-275 |
| AAS80163 5-enolpyruvylshikimate-3-phosphate synthase [Brassica rapa subsp. campestris] | 2415 | 5e-270 |
| AAL65913 5-enolpyruvylshikimate-3-phosphate synthase [Orychophragmus violaceus] | 2391 | 3e-267 |
| NP_182055 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis thaliana] | 2355 | 5e-263 |
| XP_002880170 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis lyrata subsp. lyrata] | 2352 | 1e-262 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P17688 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic | 2456 | 4e-276 |
| P05466 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic | 2355 | 2e-264 |
| P10748 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic | 1960 | 1e-218 |
| P11043 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic | 1947 | 4e-217 |
| P23981 3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic | 1943 | 1e-216 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6JDV0 3-phosphoshikimate 1-carboxyvinyltransferase | 2415 | 4e-270 |
| Q8W1M5 3-phosphoshikimate 1-carboxyvinyltransferase | 2391 | 2e-267 |
| Q9FVP6 3-phosphoshikimate 1-carboxyvinyltransferase | 2258 | 6e-252 |
| Q8LC97 3-phosphoshikimate 1-carboxyvinyltransferase | 2254 | 2e-251 |
| C8YXI6 3-phosphoshikimate 1-carboxyvinyltransferase | 1979 | 1e-219 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G45300.1 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase | 2356 | 1e-265 |
| AT1G48860.1 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative | 2259 | 2e-254 |
| AT1G48860.2 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative | 1857 | 1e-207 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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