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Information for unigene UN21452
| FASTA Sequence |
| Unigene ID: UN21452 | Length: 1534 |
SSR | | GCTTCTTCGTTTTTAGTTGATTTCGAACCCTAAGCTAAAAAGAGGAAAGAGGTCTTTTCTCGGGAAACAAAACAGATATTTTCTAT
CTCATCTCATCTCGCAGTGAGAAAAAAAAAGATGCAGAATCCGAGGCTCAAACAGCAGCAGCAGCAGCAACAACAAGCAATGATGC
AGCAAGCTTTGATGCAACAACACCACTCTCTCTATCATCCTAGCCTCATGGCTCCTCCACCTCCTCCTCCTCCTCAGATGGAGCCT
CTACCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCACTACTTGCCGCAGTGTGTATGCTGGCAACATCCACACGCAGGTCACTGA
GGTTCTTCTTCAAGAGATTTTCGCAAGCACCGGTCCTGTTGAGAGCTGTAAGCTCATCAGAAAGGATAAGTCATCATATGGATTTG
TTCACTACTTTGATCGACGATCTGCTGGTTTGGCTATCATGTCTCTTAACGGAAGGCATCTGTTTGGACAGCCTATCAAAGTTAAC
TGGGCGTATGCTACTGGTCAAAGGGAAGACACATCAAGCCATTTCAACATTTTTGTTGGAGATCTTAGTCCAGATGTTACTGATGC
AGCTTTGTTTGAAAGCTTTTCTGCCTTTAACACTTGCTCGGATGCAAGAGTAATGTGGGACCAGAAAACTGGACGCTCAAGAGGCT
TTGGATTTGTTTCTTTCCGCAATCAGCAGGATGCTCAAAATGCCATAAATGAAATGAATGGTAAATGGTTAAGTAGCAGACAAATC
AGATGCAACTGGGCGACAAAAGGTGCTACTTTTGGGGAGGACAAACATAGTTCTGATGGAAAAAGTGTCGTTGAACTCACAAACGG
CTCGTCAGAGGATGGTAGAGAGATCTCAATCTCAAACGAAGAAGCTCCTGAAAACAATCCTCAGTATACCACTGTGTATGTAGGAA
ACCTCGCTCCTGAATTTTTGCAGGTAACTCAGCTTGATCTACACCGCCTGTTCCATACACTTGGCGCCGGAGTGATTGAAGAGGTC
CGTGTCCAGCGAGACAAAGGCTTTGGTTTTGTGAGATACAACACTCATGATGAGGCTGCTCTTGCTATTCAAATGGGCAACTCTCA
GCCTTTCCTCTTTAACAGACAGATAAAGTGTTCATGGGGAAACAAGCCAACTCCAATAGGGACAGCCTCAAACCCGCTTCCACCAG
TGCCAGTGGCAGTCCCTGGTCTGTCCCCAATGGACCTTTTAGCCTATGAGAGGCAACTGGCTTTAGCCAAGATGCACCCTCAGGCT
CAGCATTCTCTAAGGCATGTCAATGCAGCTGGGGCAAGTGCAGCGGCTATGTACGATGGTGGTTTTCAGAATGTAGCTGCGGCGCA
TCAACAGCTCATGTACTATCAATAATAAACTCTTGGTGTCTTAGCGCTAAGATACCTTTTCTCCTTCTTCTTTTTTCCTTCTTAAT
TTTATCACTTTCTTGTTTTCTTTTTCTAGACCTTGTTCAGAGTCTCTTATGTATGTGTGTCTCTCATTTGAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_175810 oligouridylate-binding protein 1A [Arabidopsis thaliana] | 1937 | 1e-214 |
| XP_002894477 hypothetical protein ARALYDRAFT_474538 [Arabidopsis lyrata subsp. lyrata] | 1910 | 2e-211 |
| XP_002882868 hypothetical protein ARALYDRAFT_478823 [Arabidopsis lyrata subsp. lyrata] | 1811 | 5e-200 |
| AAM65229 oligouridylate binding protein, putative [Arabidopsis thaliana] | 1794 | 4e-198 |
| NP_188026 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1786 | 4e-197 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q01085 Nucleolysin TIAR | 441 | 1e-042 |
| P70318 Nucleolysin TIAR | 356 | 1e-032 |
| P32588 Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 | 347 | 1e-031 |
| P31483 Nucleolysin TIA-1 isoform p40 | 261 | 1e-021 |
| P52912 Nucleolysin TIA-1 | 257 | 3e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SYG4 At1g54080/F15I1_16 | 1937 | 8e-215 |
| Q8LAP3 Oligouridylate binding protein, putative | 1794 | 3e-198 |
| Q9LJH8 AT3g14100/MAG2_5 | 1786 | 2e-197 |
| B9ST80 Nucleolysin tia-1, putative | 1677 | 1e-184 |
| Q9LQI9 At1g17370 | 1652 | 9e-182 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G54080.2 oligouridylate-binding protein, putative | 1928 | 5e-216 |
| AT1G54080.1 oligouridylate-binding protein, putative | 1921 | 3e-215 |
| AT3G14100.1 oligouridylate-binding protein, putative | 1787 | 1e-199 |
| AT1G17370.1 UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | 1653 | 4e-184 |
| AT1G17370.2 UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | 1634 | 6e-182 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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