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Information for unigene UN21457
| FASTA Sequence |
| Unigene ID: UN21457 | Length: 1522 |
| SNP | GGTCGAATCAAACTACTCAAATTCCGAACCCGCAATCAAATTGCGAGATATTCAACAAAAGATTCCATCATTTAACTTTTCTTCTG
TTAAGACAGAAAACTAGTCTAAAAACATCTGATAATGGCTGCTAGGAGTTTTAAGTTGTTCATAAAGTAAAAAAAAAAAACAGATA
AAGAAAAAATGCAACACTACAAAAAGAAAAAAACTTGTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCTTCTTTTTCTT
CTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACTACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCTTCTACTT
CCTCCTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAGAGGCCTCCACCACTTTCTCTTCTCCCTCATCT
TTCTTGTCAAGATTCTCCATCACTTCTTTCATTACATCCACATTCTTACGTGGGGCAACACCTTTGTCATAAAATTCTAGTCGTTC
CTCTACTTGTTCCCTAAGTTTCTCACCAAAAGCCGTAGTGCTGCTATCAGCGAAACAATCAATCCGGGAAGCAATGGAACACTTGT
TTGCCAGGTAACGAGCAATACGTCCCTTGTTTTTAGCAGCCGCGCGTCCAATGAACGAAGAATGGAATATAAGACCGTACTTGGGC
GTGTTCCCACGCGTTTTAAGCGCCCTGAAAAGTGCCTTCTCAGCACCAAGAATCTGGAGAGTTGAAGAGGGGCACTTGGCGAGATT
CGTCAGGCTCCCAGCATGTGAGATCAGCCTTGCACCAACCATATCTCCGATCAATGCCGCCAAGTTTGGAGCAATGTCGCTCATTT
TAGCAACAAGGTAATCGTGGAGCTTCTTTCTGTAATCAGCTAGCTCTATGACTTTCTGAGCAAAGGTCTGGACGTTCATCAGATCA
AGTGGAGATAAATCCTGGCCCATAGATGCTTTTCCAGCTTCAACGACTTCTTTTGCCTTATCTTCATCCCCGAGGACTTCAGTAAG
CATAGGGATGTGCTCTTCAGAGAGCTTTGACTTGTCTTCAATCATCTTTGAGACTCGGGCGTAAAGGTAGTTGTCATTTACTATCT
TCACTAGCTCGGGGAAGTGCCACGAGTACCATTCTCTGACTCTCATGGCAAAGGAGTTGATATCCTTATCAAGAGTATCAAGCATG
AAGATGGCTTGAATAACCATGTTGTCCACACGGTTAACATTGAACTTCACCTTTGCTCTGCTGTAGCTGTGAGCTAGTCCAAGTTG
TGCTTTCTCCAAATCACCAGGCTTTAGGTCCTTGATGAACCTATCAAAATGCTGACGAACACCTCTAAGAAGCTCGTGAACGAACT
CGTTACTCTGGCATGGGATCTTCGTGGCTTCAAAGATGCAAGAACCAATCTTTGGCTCAGAGACTCCTAAGCTGAACTTGGGTTTC
TTGCCTTCCTTCACTTTCGGAAGGTTCAACTCCAGAAAACTTCTCAGCTCATCACTCATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187892 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana] | 1962 | 1e-217 |
| XP_002882791 hypothetical protein ARALYDRAFT_478647 [Arabidopsis lyrata subsp. lyrata] | 1948 | 6e-216 |
| NP_176007 homolog of nucleolar protein NOP56 [Arabidopsis thaliana] | 1896 | 6e-210 |
| XP_002894559 hypothetical protein ARALYDRAFT_474678 [Arabidopsis lyrata subsp. lyrata] | 1884 | 2e-208 |
| BAE98741 putative nucleolar protein [Arabidopsis thaliana] | 1860 | 9e-206 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O94514 Nucleolar protein 56 | 1254 | 7e-137 |
| Q3SZ63 Nucleolar protein 56 | 1238 | 5e-135 |
| Q95K50 Nucleolar protein 56 | 1234 | 2e-134 |
| O00567 Nucleolar protein 56 | 1233 | 2e-134 |
| Q9D6Z1 Nucleolar protein 56 | 1233 | 2e-134 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LTV0 Nucleolar protein | 1962 | 1e-217 |
| Q9SGT7 At1g56110/T6H22_9 | 1896 | 4e-210 |
| Q0WVV7 Putative nucleolar protein (Fragment) | 1860 | 6e-206 |
| B9IF81 Predicted protein (Fragment) | 1748 | 6e-193 |
| B9DHI0 AT1G56110 protein (Fragment) | 1739 | 7e-192 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G12860.1 nucleolar protein Nop56, putative | 1980 | 4e-222 |
| AT1G56110.1 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) | 1896 | 2e-212 |
| AT3G05060.1 SAR DNA-binding protein, putative | 861 | 2e-092 |
| AT5G27120.1 SAR DNA-binding protein, putative | 851 | 3e-091 |
| AT5G27140.1 SAR DNA-binding protein, putative | 681 | 2e-071 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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