Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN21492

FASTA Sequence
Unigene ID: UN21492Length: 832 SSRSNP
GGGTGGGAACTTATTATTACATCGACACTAAACTAGCGCCGCGCGGAGTCAGAGCGAGAGCGAAAAAAGGCAGAGAGAGAGAGAGA
GAGAGAAGAAGGATGTTCTTCCACATAGTGTTGGAGCGAAACATGCAATTACATCCTCGATTCTTTGGTCGCAACCTTCGTGAAAA
TCTCGTCTCTAAGCTCATGAAAGATGTCGAGGGCACTTGCAGCGGCCGACATGGGTTTGTAGTGGCGATAACAGGAATAGAAAGTG
TAGGGAAAGGACTGATCCGAGATGGGACTGCCTTCGTCACCTTCCCCGTTAAGTACCAGTGCGTTGTTTTCAGACCTTTCAAAGGC
GAGATTTTGGAAGCTGTTGTCACTTTGGTCAATAAGATGGGTTTCTTCGCTGAAGCTGGCCCTGTTCAGATTTTTGTGTCCAAGCA
TTTGATTCCAGATGATATGGAGTTTCAGGCTGGAGACATGCCTAACTACACGACATCTGATGGATCAGTTAAGATCCAGAAAGAAT
GTGAAGTAAGGCTAAAGATTATTGGAACAAGAGTCGATGCCACTGAAATCTTTTGTGTGGGTACCATCAAAGACGATTTTTTGGGA
GTCATCAACGACCCTGCAGCCGCTGCATAAGCAACGGTTCCAGGCTGACTTCGCTTTTGGTCCAGATGATGGCATGTGATAAAAAA
GATGTAACATACACCATCTACAAGTTGAAGTTTATGGATATGTTTATTCTGAATAATGTTTAATTTTGATTCGAGTGTAGTAGACT
CTGTTCCTCTATATTTTTTCAAGAGTGTATCTTATTGTGTTAGAAATAAAAGTAATCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866314 DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]9089e-096
NP_200726 DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]8935e-094
XP_002520498 DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis]8783e-092
XP_002298912 predicted protein [Populus trichocarpa]8721e-091
P46279 RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B78667e-091

Swiss-Prot top hits (Blast detail)Scoree value
P38421 DNA-directed RNA polymerase II subunit RPB78932e-095
P46279 DNA-directed RNA polymerase II subunit RPB78663e-092
Q5E9B8 DNA-directed RNA polymerase II subunit RPB75062e-050
Q7ZW41 DNA-directed RNA polymerase II subunit RPB75062e-050
P62487 DNA-directed RNA polymerase II subunit RPB75062e-050

TrEMBL top hits (Blast detail)Scoree value
Q541V8 Putative RNA polymerase II8933e-094
B9S3C9 DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative8782e-092
B9GGV6 Predicted protein8729e-092
C6SWZ3 Putative uncharacterized protein8665e-091
B7FHG8 Putative uncharacterized protein8631e-090

Arabidopsis top hits (Blast detail)Scoree value
AT5G59180.1 NRPB7; DNA-directed RNA polymerase/ RNA binding8932e-096
AT4G14660.1 NRPE7; DNA-directed RNA polymerase1772e-013
AT3G22900.1 NRPD7; DNA-directed RNA polymerase1673e-012
AT4G14520.1 DNA-directed RNA polymerase II-related1153e-006
AT4G14520.2 DNA-directed RNA polymerase II-related1153e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  22%
 
114  44%
 
93  33%

Unigene MembersMember information