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Information for unigene UN21496
| FASTA Sequence |
| Unigene ID: UN21496 | Length: 1182 |
| SNP | GGCCCGTTGGTCCGAGAACTCCTCTGCGTATCCTCTAGATCTGTTCGTTTTCGGACATCTGTTATCACCAAATCTGAGATCTATCG
ATCTATGCTGTGTCACCACCACCACCAGATCTGCAACTCTTATAATGGCGGAGACTCTCAAAGAAGATTCGATCACGATTCGCGAG
GTCTGGAACGACAACCTCCTCGAGGAGTTCGCGCTGATCCGCGAGATCGTCGACAAATACAACTACATCGCCATGGACACCGAGTT
CCCAGGCGTCGTCCTCAAGCCCGTCGAGACCTTCAAACGCAACAACGACCTTAACTACCGCACCCTCAAAGAGAACGTCGACCTCC
TCAAACTCATCCAGCTCGGCCTCACCTTCTCCGACGAGCACGGCAACCTCCCCACCTTCGACGACAAGTTCTGCGTCTGGCAGTTC
AACTTCCGCGAGTTCGACGTCGGGGAAGACATCTACGCGACCGAGTCCATCGAGCTTCTCCGCCAGTGCGGGATCGATTTCAAGAA
GAACGTCGAGAGGGGGATCGACGCTGTCCGGTTCGGGGAGCTGATGATGTCTTCAGGGATCGTGCTTAACGATTCCATCACGTGGG
TTACGTTCCACGGAGGTTACGATTTCGGGTATCTCGTCAAGCTTCTGACTTGCAGGGAGCTTCCCTTCGAGCAGTCCGATTTCTTC
AAGCTGCTGTTTGTGTATTTCCCCACGGTTTACGATATCAAGCACTTGATGACGTTCTGCAACGGGCTGTTCGGAGGGTTGAACAG
GCTAGCGGAGCTTATGGGGGTTGAGAGAGTTGGGGTTTGTCATCAGGCTGGGTCCGATAGCTTGCTCACGTTAGGCTCGTTTAGGA
AGCTCAAGGAACGTTATTTCCCTGGGTTTACTGAGAAGTACACTGGTGTCTTGTATGGTCTAGGTGTGGAGGATTCTGCTACTACT
ATTACTAATTAATGTTCGAGGGAGGGGGAGGTCTGCATTTAGGTTTTTTTTTTAGTCTTTGTGAGTGTGAGACCAATTAGAGACTT
TGTTGTTTGTGTAAATTGGTTTTTCTAGTAAGTGATTGTTGTGTCTTTTGTAATTTTTCAGGAAAAAAAAACCTCTTTGATCAAAT
GAGGAGAGGGGTTTGTTGTTAATGTTTTAGCTTTGAGTTTCTGAATGTATATCATCATTTCTGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002871445 hypothetical protein ARALYDRAFT_487926 [Arabidopsis lyrata subsp. lyrata] | 1300 | 6e-141 |
| NP_196657 putative CCR4-associated factor 1-10 [Arabidopsis thaliana] | 1291 | 6e-140 |
| AAK92792 putative CCR4-associated factor [Arabidopsis thaliana] | 1284 | 4e-139 |
| XP_002324905 predicted protein [Populus trichocarpa] | 1074 | 9e-115 |
| XP_002515442 ccr4-associated factor, putative [Ricinus communis] | 1074 | 9e-115 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LEU4 Probable CCR4-associated factor 1 homolog 10 | 1291 | 3e-141 |
| Q9SKZ2 Probable CCR4-associated factor 1 homolog 7 | 1001 | 1e-107 |
| Q9SAI2 Probable CCR4-associated factor 1 homolog 6 | 999 | 2e-107 |
| Q9S9P2 Probable CCR4-associated factor 1 homolog 2 | 812 | 9e-086 |
| Q9LXM2 Probable CCR4-associated factor 1 homolog 9 | 700 | 9e-073 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9IL41 Predicted protein | 1074 | 6e-115 |
| B9RNX3 Ccr4-associated factor, putative | 1074 | 6e-115 |
| B9SMT7 Ccr4-associated factor, putative | 1070 | 2e-114 |
| B7FJ18 Putative uncharacterized protein | 1065 | 7e-114 |
| B9GMB8 Predicted protein | 1058 | 4e-113 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G10960.1 CCR4-NOT transcription complex protein, putative | 1291 | 2e-142 |
| AT2G32070.1 CCR4-NOT transcription complex protein, putative | 1001 | 1e-108 |
| AT1G80780.1 CCR4-NOT transcription complex protein, putative | 999 | 2e-108 |
| AT1G80780.2 CCR4-NOT transcription complex protein, putative | 999 | 2e-108 |
| AT1G15920.2 CCR4-NOT transcription complex protein, putative | 812 | 8e-087 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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