Information for unigene UN21529
| FASTA Sequence |
| Unigene ID: UN21529 | Length: 1102 |
| SNP | CGAACCCGTATTGTAATCTCTTTCTTCTGTAAATCTGTAGAGAGATTACACTTCTTGTCCTATATATTTATATCATATCATATTAC
ATCATCTTCTGAGGTCCATAAACATTACACATTAAAACTAGAGAAATGGTACAACAATCTTTTTTTCTTTCTTCTCTTCACTTCTC
TATCTCTTACATCAATTTTCCTGCTTTACTTTTATACCTCTGCATCTTTTTGTTATTAAGAGTCTCTACATTATTAGTTTTTTTTA
ACTTACCTCAGTTTCTTTCTTTCTCACTTCTCTTCCTGTTTATATCCCAACACGACATGCTGGTCCACCCCTACCGGGTAACATCC
CAAATGCCGGCGACCTAGGCATTTGGCAGTTGAAAGAGTTGAAGGAGTCAGAGAGTGTAGAAGGAGTAGAATTATCATCATTATCA
GAAGAAGGAGACCACAGATCTGATCCATTATTGTCCACCGAATCAGCAAACAGAAGCAAATGATTAGTTGACGATGCAAATGGACT
ATCTGGCAAGCATTCCTCCAACTTCTCTTGTAGATTTATTGTATCATCATCAGATCCTTCTTTGGAACTTCCTTTCCCTATCTCTC
CTCCTGCTTTAACCCCACCTGGGCGTGGAGACACAAGTGTCTGGCTAAAAGGATTTGGAGAATGAATGTGTGTAGATGAGGAATTG
AGCTGGAAATGATTCTTGACGTCATGAAGCTGCAGATTCATTAGCCTTCTGCTTTGAAGCTCAAGAATCTCTTCTTCAAACTTACT
CCTCCAGATAACATCTTGGGGGTTGTTATAGAACCCTCTCCCTCCTAAAACATCTCTGGGGCTAGAATCAAGCCCTGTTGGGGACA
ATTCTAGCTCTGTTGTTTGGTTAGTTCTGTATTTGTCAGGGACTTTGCCTTTCTCCTTGTAAGGCTTAACAAGAACCCTTGAATCA
CACACAAAGTGAGGGTTCCCTTTGGCAAGAATGCTCTTGACAGTCTCAGGGTACAAAAAAGTCACAAACCCAAACATTCTCTTTTG
CTGATATGGTATCCTCACATCTTGAACTGGTCCAAAAGTACTGAAATAATGGACACATCTTCCTCCCTGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAM66020 unknown [Arabidopsis thaliana] | 1197 | 5e-129 |
| NP_190763 zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] | 1197 | 5e-129 |
| XP_002877836 hypothetical protein ARALYDRAFT_485553 [Arabidopsis lyrata subsp. lyrata] | 1196 | 6e-129 |
| AAL87320 unknown protein [Arabidopsis thaliana] | 1190 | 3e-128 |
| CAN69883 hypothetical protein VITISV_031889 [Vitis vinifera] | 462 | 8e-044 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SV09 Zinc finger CCCH domain-containing protein 46 | 1197 | 2e-130 |
| Q10LZ9 Zinc finger CCCH domain-containing protein 23 | 411 | 3e-039 |
| Q10M00 Zinc finger CCCH domain-containing protein 22 | 392 | 4e-037 |
| Q0D3J9 Zinc finger CCCH domain-containing protein 53 | 350 | 3e-032 |
| Q94CJ8 Zinc finger CCCH domain-containing protein 55 | 290 | 3e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5B9W5 Putative uncharacterized protein | 462 | 5e-044 |
| Q6T284 Predicted protein | 451 | 1e-042 |
| B9GWA9 Predicted protein | 449 | 2e-042 |
| B9RIF6 Nucleic acid binding protein, putative | 442 | 1e-041 |
| B9HNZ4 Predicted protein | 419 | 5e-039 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G51950.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | 1198 | 1e-131 |
| AT3G51950.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | 1198 | 1e-131 |
| AT3G63450.1 RNA binding / nucleic acid binding / nucleotide binding | 331 | 5e-031 |
| AT3G63450.2 RNA binding / nucleic acid binding / nucleotide binding | 331 | 5e-031 |
| AT3G21100.1 RNA binding / nucleic acid binding / nucleotide binding | 290 | 3e-026 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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