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Information for unigene UN21530

FASTA Sequence
Unigene ID: UN21530Length: 1407 SSR 
GGAGAGTCGTTCCTTTGCGTCTTCTACATCTTCTTCTTCCCCCAAATCCTCTCGCTTAGGGTTTCTCCTCAGTCTTCTAGATCCTC
CTCCTCCTCCCAATCTTTACTTCTTCAAGATGACGAGGCAATCTTCTGATTGAGCTCAGAGTATCCCTTGTCTCGCATCTTAGATT
GCCTATCGGGCTTTATCACTGAGTAGATCTGTCAAATGAGCTAACCTCTCTAAGGGGATTCAAGTAGAAGGTTTTGTTGTTGGTGG
TTTTAGTTGAGAGTCCACAACATAAGGAGACAAAACAGTGAGAAAAAAAAATGTCAAGCGTTGGAAACACCCACTGGTGTCATAGA
TGCGAGCGTGGTGTCCGGCTACACGGACGAGAGACTGTATGTTCTTATTGTGGAGGAGGGTTTGTTGAACTGCTTGAACTCCCTCA
AGCCAGCCCGTTCGGTATGTTCAGATCTCACAGGGACGTTGCGGAACGTGATCATCAGGCTTTCGATCTCATGGATGCTCTCTCCG
ACTTTATGAGGGACCGAGAAAACAGAGCAAGAGGAGGCATCATCACTCCTGGTCTGGCTCCTCTGTTGATCTTTGGTGGTCAGGTT
CCTTATAGACTATCTGGAGTCGAAGCCCTCTTCAACGGCGGGTCGCCTGGCATTGGCATCACTCGTGGGAACACCGGAGACTATTT
CTTCGGTCCTGGTCTTGAAGAGCTCTTTGAGCAGCTTTCAGCTGGAGCTACTACTCGCAGAGGTCCACCACCTGCTCCGAGAACAT
CAATAGATGCATTGCCGACCATCAAGATCTCGCAGAGGCATCTTAGGTCGTCTGACTCGAACTGTCCCGTGTGTAAAGACGAATTC
GAATTGGGAGCAGAAGCCAAACAGATGCCTTGTAACCACATCTATCATTCTGACTGCATTGTCCCGTGGCTGGTTCAGCACAACTC
GTGTCCTGTCTGTCGCCAAGAGTTGCCATCAGGTAGAGGATCTTCGAGTAGTAGTCAAAACAGAACCAACACCCGAAACAGCAGAA
GTGGTGGTAGTAGTAACAGTTCGTGAGAGCAGCAATGAGAGAAGGAACCCTTTTTCTTCCTTCTGGCCATTTCGTTCGTCTGGTTC
AGCTTCAAACTCCGCTCAGAACCGTGGAGGCACGAGAAACTCGGACACAACGGATGAGAACCATAACTACCATCACCAGCAACAGC
AACAGTCACATATGGGTTACAGAGGGTGGCCTTTTGATTACTAAAGGTGAGCTAAAGTTAAAAAAAAAAAAAGAAGACTTGGGTCT
CGCTTTGTGTTTTATGCTTTCCACTCTTCCTCATACTCTCTTTATCAACATAAATAATGGACAAGTTGTATCTTTTACTGTAGATT
TTTTACTTCTGTGTAAAACAGTTTATCATTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002879893 ring-H2 finger C1A [Arabidopsis lyrata subsp. lyrata]7891e-081
NP_565942 ubiquitin-protein ligase RNF115/126 [Arabidopsis thaliana]7739e-080
NP_567039 RING/U-box domain-containing protein [Arabidopsis thaliana]6232e-062
XP_002283612 PREDICTED: similar to thioredoxin-related protein isoform 1 [Vitis vinifera]5703e-056
NP_001050120 Os03g0351800 [Oryza sativa Japonica Group]4987e-048

Swiss-Prot top hits (Blast detail)Scoree value
Q6DIP3 RING finger protein 1263139e-028
Q6IRP0 RING finger protein 126-B3102e-027
Q7T0Q3 RING finger protein 126-A3066e-027
Q91YL2 RING finger protein 1263031e-026
Q9BV68 RING finger protein 1262985e-026

TrEMBL top hits (Blast detail)Scoree value
O22197 At2g408307736e-080
Q94AK4 Putative uncharacterized protein At3g565806232e-062
C6TMP5 Putative uncharacterized protein6024e-060
B3VWL4 Thioredoxin-related protein (Fragment)5991e-059
B3VWL6 Thioredoxin-related protein (Fragment)5991e-059

Arabidopsis top hits (Blast detail)Scoree value
AT2G40830.2 RHC1A; protein binding / zinc ion binding10422e-113
AT2G40830.1 RHC1A; protein binding / zinc ion binding10422e-113
AT2G40830.3 RHC1A; protein binding / zinc ion binding10422e-113
AT3G56580.2 zinc finger (C3HC4-type RING finger) family protein6239e-065
AT3G56580.1 zinc finger (C3HC4-type RING finger) family protein6239e-065

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
123  50%
 
102  33%
 
191  17%

Unigene MembersMember information