Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN21540

FASTA Sequence
Unigene ID: UN21540Length: 1686 SSR 
GCTCTCGATGATCAGTATGCCACTGCCATCAGAAACTGCGATCCTAATGGTCCCCTCATGCTCTACGTTTCTAAGATGATTCCAGC
CTCTGACAAGGGTAGATTCTTTGCTTTTGGTCGTGTCTTCTCTGGTAAGGTGTCCACTGGTATGAAAGTCAGGATCATGGGTCCCA
ACTTTGTTCCTGGGGAGAAGAAAGACCTGTACGTCAAGAGTGTCCAGAGGACTGTCATCTGGATGGGAAAGAGGCAAGAGACTGTT
GAGGATGTTCCCTGTGGTAACACTGTTGCTATGGTTGGTCTTGATCAGTTCATCACCAAGAATGCTACGCTGACTAATGAGAAAGA
AGTGGATGCCCACCCTATTCGTGCAATGAAGTTTTCTGTGTCCCCTGTTGTCCGTGTTGCTGTTCAATGCAAGGTCGCTTCTGATC
TTCCCAAGCTTGTTGAGGGACTTAAGAGGTTGGCCAAGTCCGACCCTATGGTTGTGTGCACAATGGAGGAGTCTGGTGAGCACATT
GTTGCTGGTGCTGGAGAGCTTCATCTTGAGATTTGTCTGAAGGATCTTCAGGATGATTTCATGGGTGGTGCTGAGATCGTCAAGTC
AGACCCTGTTGTCTCATTCCGTGAGACTGTTTTGGAACGATCCGTCCGTACCGTGATGAGCAAATCCCCAAACAAGCATAACCGTC
TCTACATGGAGGCTAGGCCCTTGGAGGACGGTCTTGCGGAGGCAATTGATGATGGCCGTATTGGTCCGAGAGATGATCCCAAGATC
CGTTCCAAGATCTTGGCAGAGGAGTTCGGCTGGGACAAGGATCTTGCAAAGAAGATCTGGGCGTTTGGACCTGAAACCACAGGGCC
CAACATGGTTGTCGACATGTGTAAGGGAGTTCAGTACCTAAATGAAATCAAGGATTCCGTTGTTGCTGGGTTCCAGTGGGCGTCCA
AGGAAGGTCCTTTGTGTGATGAGAACATGAGAGGAATCTGCTTTGAGGTTTGTGATGTGGTGCTCCACTCTGATGCAATCCACAGA
GGTGGTGGTCAGGTTATCCCAACAGCGAGGAGGGTTATCTACGCCTCGCAGCTCACTGCCAAGCCCAGACTGTTGGAGCCGGTTTA
CATGGTGGAGATCCAAGCACCAGAGGGAGCACTTGGTGGAATCTACAGTGTGCTGAATCAGAAGCGTGGACATGTGTTTGAGGAGA
TGCAGAGGCCAGGAACACCATTGTACAACATCAAGGCTTACTTGCCAGTGGTGGAGTCATTTGGATTCTCGAGTCAGCTTAGGGCA
GCAACCTCAGGACAGGCCTTCCCACAGTGTGTGTTTGATCATTGGGAGATGATGTCGTCTGACCCTCTGGAGGCAGGATCGCAGGC
TTCAACGCTGGTGGCTGACATCAGGAAGAGGAAGGGTATGAAGGAGCAGATGACTCCATTGTCTGACTTCGAAGACAAGCTGTAAG
CAGCAGCAGCAGCAGCCAACAACAAGACCACCTCTCTTTATATTTCACTCTTGTCACCTTTTGATCCCTTTTTGTTTTCTGTTTTG
TTTTTATGATGGATTGAGTATGACTTTTATCTCTGGCCATCCTCTTGAATGTTTTACTTTTTAGTTGAGAACTTGTTTGTCTATGT
GTTCGCAAATATTTTACTTTTTGTTCTCATTATCCTGCTTTTTTAAGCTGTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33766 unnamed protein product [Thellungiella halophila]24801e-277
XP_002894554 hypothetical protein ARALYDRAFT_892631 [Arabidopsis lyrata subsp. lyrata]24721e-276
NP_849818 elongation factor EF-2 [Arabidopsis thaliana]24504e-274
AAN31925 putative elongation factor [Arabidopsis thaliana]24504e-274
AAF02837 elongation factor EF-2 [Arabidopsis thaliana]24504e-274

Swiss-Prot top hits (Blast detail)Scoree value
O23755 Elongation factor 223793e-267
P28996 Elongation factor 221071e-235
P09445 Elongation factor 217135e-190
P58252 Elongation factor 217127e-190
P05197 Elongation factor 217127e-190

TrEMBL top hits (Blast detail)Scoree value
Q56WX9 Putative uncharacterized protein At1g5607024503e-274
Q84R07 Putative elongation factor (Fragment)24503e-274
Q8H145 Putative elongation factor (Fragment)24503e-274
Q9ASR1 At1g56070/T6H22_1324503e-274
Q9SGT4 Elongation factor EF-224503e-274

Arabidopsis top hits (Blast detail)Scoree value
AT1G56070.1 LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding24511e-276
AT3G12915.1 GTP binding / GTPase23498e-265
AT1G06220.2 MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding10163e-110
AT1G06220.1 MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding10163e-110
AT5G25230.1 elongation factor Tu family protein9975e-108

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  25%
 
84  50%
 
191  13%
 
111  13%

Unigene MembersMember information