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Information for unigene UN21542

FASTA Sequence
Unigene ID: UN21542Length: 1470  SNP
GCAAAACAAAAGAATTCGAATTTTAAAATAAATTGCTTTTGTCATAATGGATTATACACCATATATTAGCTTCGTGAAGCAAAAAC
AGAAGCATAAATTTCAGCAAATAGCATCTGTTATTTTGGAGCACCAATATTATATAGAAGGAAACTATACAATTAACTCAGACAAA
ACCAAAGAAACAAATGGAAAAAGAAGAGGAAGGATCACAAAGTTTCAAGACAAGTAGAGGGGACACAACAAAAGAACAGAACCGCA
AGAAGAAAAAAATAGTAAACTAATGCTAATTAGTACTGATCATAACCTCTTTTTGGTAAGGAAACTGCTTAGCATTACGGGTTTAA
TCCAATTTGATTCTATCTTTCTCTTCTTCTTGCTTCTTTGGTGCTGCCGGAAAATATTTGATTCCGGTAAGGTCACCTGCTTTGCT
TATAACCTTTAGAGCTTTGATAAGATCTTCTCTTGAGTGAGATGCGGATATGCAAATACGAGCCCTGGCTAGCAATAGAGGTGTAG
CTGGGAAACCAACAACCACAACTGCGACGTTTTCTCGCAAGCATTCCCTAGAGAAGGCTGGGATTTTTGCTGGATTGTAAAGCATT
ATTGGCATCACTGGGGAATCATTGTCTCCAAGAACCTCAAATCCCATCTTCTGCAACTCAGCCCTGAAAAAGTTGCTGTTCTCCCT
TATCCTTGCTAACTTTTGCGCACCTCTGTTTGAACCGTCCTCTCCAAGGATAACTTTTATGGAAGATATGATCTGTTGCGCTGAAG
GAGTTGAAATTGAAGTTGCGTAAAGGTGAGCAGGGCAATGGTACTTCAAATATTGAATGAGGTCCTTGGATCCGGCAATATAGCCC
CCACAAGAACCGAAAGATTTGGTAAAAGTTCCCATCATTATGTCTATATCAGCTGTGTCAACACCGAGAAGTTCGCAAACACCCCT
GCCTGTTTTCCCAATTGCTCCAATGCTGTGAGCTTCATCCAGGTAAACATATGCCTTATATTTCTTGCATACGGAGACAATCTCGG
GAAGTTGACAAATCTCGCCTTCCATGCTGTAAATACCCTCAACAACAACAATAATTTTCTTCCAGGGTCTGTGTGTCCTAGGTTGT
CCCTCAGCGATTTGTTCTTTCAATACTCTTTCCAAATGAGCAGGTGTGTTGTGTTGGAAAACGCGGATAGTGGCTCCTGAACCTCG
AGCACCGTTTACAATTGAAGTATGGTTCAAAGAATCGCTTATTATCAACCCTCCCTTTCCAATCAAGACAGGAATGATAACAGAGT
TAGTAGCGAAGCCCATGCCAGTGACAATAGCAGCGGGTTTCCCCACATACTTGGCAACACATTCTTCAAGCTCTGCATGAACAGAA
GTGGTTCCTGCGTCAACGCGAGAGCTACATGTACTAGGGGAAAACTTCTTCAAAGACTCAATAACACGAGGGGTGCAATATTCATC
GAAAGAAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABW97708 serine palmitoyltransferase long chain base subunit [Brassica rapa subsp. chinensis]18894e-209
XP_002875925 hypothetical protein ARALYDRAFT_485232 [Arabidopsis lyrata subsp. lyrata]18294e-202
NP_190447 serine palmitoyltransferase 1 [Arabidopsis thaliana]18276e-202
BAB03231 serine palmitoyltransferase [Arabidopsis thaliana]17854e-197
NP_197756 serine palmitoyltransferase [Arabidopsis thaliana]17854e-197

Swiss-Prot top hits (Blast detail)Scoree value
O15270 Serine palmitoyltransferase 210692e-115
P97363 Serine palmitoyltransferase 210656e-115
O54694 Serine palmitoyltransferase 210612e-114
Q54EX5 Serine palmitoyltransferase 210333e-111
Q9NUV7 Serine palmitoyltransferase 310111e-108

TrEMBL top hits (Blast detail)Scoree value
B2XR72 Serine palmitoyltransferase long chain base subunit18893e-209
Q9M304 At3g4878018274e-202
Q9LRB4 Serine palmitoyltransferase17853e-197
Q9LSZ9 Putative serine palmitoyltransferase17853e-197
B2XR73 Serine palmitoyltransferase long chain base subunit17389e-192

Arabidopsis top hits (Blast detail)Scoree value
AT3G48780.1 SPT1 (SERINE PALMITOYLTRANSFERASE 1); serine C-palmitoyltransferase18282e-204
AT5G23670.1 LCB2; protein binding / serine C-palmitoyltransferase17861e-199
AT5G23670.2 LCB2; protein binding / serine C-palmitoyltransferase17861e-199
AT3G48790.1 serine C-palmitoyltransferase, putative14732e-163

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  27%
 
63  27%
 
113  27%
 
101  9%
 
81  9%

Unigene MembersMember information