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Information for unigene UN21568
| FASTA Sequence |
| Unigene ID: UN21568 | Length: 1396 |
SSR | | GGATATCTCAGTTTTCAAACGTAAAGCCGATCTCAAACCTCTCTCTCTCTCTCTCAATCATGGTTGAACCGGCTAATACCGTAGGA
ATCCCATTGAACCACGCCGCGCTGCTGAGAGATGAGCTCGACATCGTGATCCCGACGATCCGTAACCTCGATTTCCTCGAGATGTG
GAGGCCTTTCCTCCAGCCTTACCATCTGATCATCGTCCAGGACGGAGATCCTTCCAAGACCATTGCTGTCCCTGAAGGGTTCGATT
ACGAGCTCTACAACAGGAACGACATTAACCGTATCCTCGGTCCCAAAGCTTCGTGCATCTCCTTCAAGGACTCTGCTTGTCGCTGC
TTCGGCTACATGGTGTCTAAGAAGAAGTATATCTTCACCATTGACGACGATTGCTTCGTTGCTAAGGATCCATCTGGAAAAGCAGT
GAACGCACTTGAGCAACACATCAAGAACCTTCTATGCCCATCCTCTCCACTTTTCTTCAACACCTTGTACGACCCATACCGTGAAG
GTGCTGACTTCGTCCGTGGATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACTGCTGTTTCTCACGGTCTCTGGCTCAACATCCCT
GATTACGATGCTCCTACCCAACTCGTTAAGCCCAAGGAAAGGAACACAAGGTATGTGGATGCTGTCATGACCATCCCAAAGGGAAC
ACTTTTCCCAATGTGTGGCATGAACTTGGCCTTTGACCGTGACCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGTC
AGCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTGTCAAGGTGATCTGTGATCATTTGGGATTGGGAGTGAAGACGGGT
CTACCTTACATTTACCACAGCAAGGCAAGCAACCCATTTGTGAACCTGAAGAAGGAATACAAGGGAATCTTCTGGCAGGAGGATAT
CATTCCTTTCTTCCAGAGTTCAAAGCTCTCGAAAGAAGCAGTGACGGTTCAACAGTGCTACATTGAGCTGTCCAAGATGGTGAAGG
AGAAGCTTAGCGCCATTGATCCTTACTTTGACAAGCTTGCTGATGCTATGGTGACTTGGATTGAAGCTTGGGATGAGCTTAACCCA
GCCACTAAAGCTTGAGCAGCCACCACTGCAGTTTTGGTTATTAGCTTAACCTATTATCTATCTTCCTTGCTTCCCTGTTTTGTTTT
CTCTCATTTCCCGGTGATTATTCAGTTGGTTTTTAAAGTCGCCGGAGTTTATTTAAATAGTGATGGTGTATTTCTATTTAAGATCG
AGACAGTCTATACTGGGTCTATACTCTGAGCTTTTTGTATTTTGTTTCAATAATAAAATCATCTTCGATGTTATAGTCTTTCTTAT
CTTAGCTTCCTGGTTTGTTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_186872 reversibly glycosylated polypeptide 1 [Arabidopsis thaliana] | 1878 | 7e-208 |
| AAC50000 reversibly glycosylated polypeptide-1 [Arabidopsis thaliana] | 1869 | 8e-207 |
| NP_197069 reversibly glycosylated polypeptide 2 [Arabidopsis thaliana] | 1842 | 1e-203 |
| XP_002871677 reversibly glycosylated polypeptide-3 [Arabidopsis lyrata subsp. lyrata] | 1839 | 2e-203 |
| AAC50001 reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] | 1827 | 6e-202 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8RU27 Alpha-1,4-glucan-protein synthase [UDP-forming] 2 | 1705 | 3e-189 |
| Q9SC19 Alpha-1,4-glucan-protein synthase [UDP-forming] 1 | 1689 | 2e-187 |
| P80607 Alpha-1,4-glucan-protein synthase [UDP-forming] | 1682 | 2e-186 |
| O04300 Alpha-1,4-glucan-protein synthase [UDP-forming] | 1651 | 6e-183 |
| P85413 Alpha-1,4-glucan-protein synthase [UDP-forming] (Fragments) | 163 | 2e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SRT9 At3g02230 | 1878 | 5e-208 |
| O22427 Reversibly glycosylated polypeptide-1 | 1869 | 5e-207 |
| Q9LFW1 AT5g15650/F14F8_30 | 1842 | 7e-204 |
| O22428 Reversibly glycosylated polypeptide-2 | 1827 | 4e-202 |
| Q8LB19 Reversibly glycosylated polypeptide-3 | 1820 | 2e-201 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G02230.1 RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) | 1879 | 2e-210 |
| AT5G15650.1 RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups | 1842 | 4e-206 |
| AT3G08900.1 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3); transferase, transferring hexosyl groups | 1612 | 2e-179 |
| AT5G50750.1 RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4); transferase, transferring hexosyl groups | 1537 | 9e-171 |
| AT5G16510.1 reversibly glycosylated polypeptide, putative | 907 | 1e-097 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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