 |
Information for unigene UN21600
| FASTA Sequence |
| Unigene ID: UN21600 | Length: 961 |
| SNP | CCATGAATATGGAAACCACTTTATGTAGAAACAATCTGCTTTTTGCATAAAATAAATTTTGTAGCTTGAGATTGTTTCAGCTACTG
TTGTGGTCTGATATGACAACAAAGATACATACATAGTTTGCATAACACCACACTCAAAGAGAAAGACACAATCTTTTATTAAACCA
TGTGGTTTTAGTAGTAAGTAAACAAACAACTCAGAAACCTGAAAGCTCCAAACAATCTTAGAGAGGTTTAGAAGCAGCATTGTCTA
TGTAAGCCCAAGCTTCTTCTTCAGAGAGTCTTCCTCCTTCAACAAGTCCCATTACCAAACTGTTGGCATAGGCTTTTGCAGGAGGT
CTTAATGGCACCTCACCTGATATAAACTTCTCAAGAACAGAAAGTGTGCATGTCATTGTAAGTATAGGTATGCCTGATTCTTTTCC
CACGCAGACAACGTTACCATACCAACCAGATTTAGCAAGTGGGATGGATCCATTGTTCTGTACTAACTGCAGAGCAGATAGATCAA
AGAGGGGAGTCTCAGAATCCACTTTCATGCCGTTTTCCTGAAACAGAACATCGTTGAACTGCTCAAGCGTGATTCTGTAGAAACAC
ATGTGAGATTGATCACTGGGACTAGTAAGAGGGTTGAGGAAAGCAGATCCTCCTTTACCCCAAGTAACTGTGGATTCACGGCCAAA
GAACAACCTGTTTGGAAACGTTCTCCACGTTGTTTCCTTCGGTGGAGTTTTATCCATTGCACCAACACATGCCTTCTTCATTCCCG
CCGCTTGTCCTCCTTGGATATAGCAAAGGAACCTCGGTTTCCACATGTTGGATCCGAAAGATGCATACCAGACATCAACCTTTGCG
AGTTCACTTCTCCAAGATGCAGTTTCAGACTCTCCAGCCATTGTTATCTTATCTTCCAACGATCAGGGTGATAAGGTCAACGAGAA
CTCCCCAACTCTCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200914 histone deacetylase 5 [Arabidopsis thaliana] | 892 | 8e-094 |
| NP_001190583 histone deacetylase 5 [Arabidopsis thaliana] | 892 | 8e-094 |
| XP_002866412 hypothetical protein ARALYDRAFT_919345 [Arabidopsis lyrata subsp. lyrata] | 889 | 2e-093 |
| NP_200913 histone deacetylase-like protein [Arabidopsis thaliana] | 849 | 8e-089 |
| XP_002305854 histone deacetylase [Populus trichocarpa] | 757 | 4e-078 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FNQ9 Genomic DNA, chromosome 5, P1 clone:MAF19 | 849 | 6e-089 |
| B9H356 Histone deacetylase | 757 | 3e-078 |
| B9RLP1 Histone deacetylase hda1, putative | 707 | 2e-072 |
| A5AIW2 Putative uncharacterized protein | 694 | 5e-071 |
| A9RXL4 Class II RPD3 type histone deacetylase protein | 483 | 2e-046 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G61060.1 HDA05 (HISTONE DEACETYLASE 5); histone deacetylase | 893 | 3e-096 |
| AT5G61050.1 histone deacetylase-related / HD-related | 850 | 2e-091 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
