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Information for unigene UN21602

FASTA Sequence
Unigene ID: UN21602Length: 1659  SNP
GGAATGCTCAGATCCGGGGCAGGTGATTTACCTAATTCTCAACCAGTTTTTTCCTTCAGATTGGGCTGGAAGTTAGATTCGTGATC
AGAGGTCTACCATGGCTGACTTTGATGAATATATGGCTGATGAGTACGACATGGATGACCTGGAGGATGAGATGAATGCAGAGTTT
GATGCTAGAGACATCGATGCATCTGATTCAGAAGTCGAAGATTTAGAACAATTGAACAAGGCTGCGGATACTTCTGCAGCTCAAGC
TCGGAACGGGAAGGACATTCAGGGTATACCGTGGGATAGACTTAGCGTTACTAGAAAAGACTACAGAAAAACTAGGCTTGAACAGT
ATAAGAACTATGAGAATGTCCCTCATTCCGGAGAGGAAGCTGGGAAGCATTGCACGGATACCGAGAAAGGCAGCTCTTTCTATACG
TTCAGGAGCAATTCTCGATCGGTGAGATCGACCATTCTTCATTTCCAGTTGAGGAATTTGGTCTGGGCTACATCGAAACATGATGT
TTACCTCTTGTCCAACTACTCTATCAGCCACTGGTCTTCTTTGACTGGTTCCAGGAATGAAATTCTTAACGTTAAAGGTCATGTAG
CTCCTTCTGAGAAACATCCGGAGAGTTTGTTGGAAGGATTTACAGAAACTCAAGTTAGCACTCTTGCAGTAAAAGAAAGGCTGCTA
GTTGCTGGTGGGTTTCAAGGAGAGCTCATTTGCAAGCATCTTGATAGACCTGGTGTGAGTTTCTGCTCACGCACAACTTACACGGA
AAACGCTATCACCAACGCAGTAGATATATATAGAAACTCCAGTGGCGCTCTTCACTTTATGGCCTCAAATAATGACTGTGGAGTCA
GGGACTTTGACATGGAGAGGTATCAGCTTGTCCAACTCTTCCGTTATCTTTGGCCCGTCAACCATAGCTCCTTAAGTCCTGATGGA
AAACTAGTAGCAGTCGTTGGAGATGACCCAAATGGTCTATTGGTAGACTCAAGCAACGGACAGACGATTGGGACGCTAAAAGGTCA
CTTAGATTATTCATTTGCATCGGCTTGGCATCCCAACGGTGTGACATTTGCCACAGGAAACCAAGACAAGACCTGTCGCATTTGGG
ACACAAGGAAAACCTCGGAGTCAGTCGCTGTACTGAGAGGTAACCTTGGAGCGATCCGGTCAATTAGATTCACATCAGACGGACGG
TACATTGCGATGGCAGAGCCAGCAGATTTTGTCCATGTGTATGATACAAAAACAGGTTACAGAAAGGAGCAAGAGATTGATTTCTT
TGGAGAGATTTCTGGGATCTCGTTTAGCCCAGACACTGAATCTCTCTTCATCGGTGTTTGGGACCGGACTTATGGAAGTCTCTTGG
AGTATGGTCGAACCAGAGACTACTCTTATCTCGATTCATTGCTTTGATACAATAAAAATTTCAAAATAAAAAGAAACTTGCATAAA
ATAATCTGTTATATACCGTATTGGTTAGATTTCATACCGACAAGAAAAGAGAGAGACTTCGAAGCTGTTCTGTTGTGTAACTCTAT
TTGTTGTACTTTTAAAATGTACATTTCCAGAAAGTTGGGGATTGTCTTGGGATCATAAAATTATCTTAGAAAGATATTTTAGTTTT
GGTTTGAAGAGATATTTAGAAGATT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_851199 transducin/WD40 domain-containing protein [Arabidopsis thaliana]21979e-245
NP_568838 transducin/WD40 domain-containing protein [Arabidopsis thaliana]21762e-242
AAM61064 WD-repeat protein-like [Arabidopsis thaliana]21682e-241
XP_002864440 predicted protein [Arabidopsis lyrata subsp. lyrata]21592e-240
XP_002299079 predicted protein [Populus trichocarpa]18034e-199

Swiss-Prot top hits (Blast detail)Scoree value
Q9Y7K5 Uncharacterized WD repeat-containing protein C2A9.032896e-025
Q93847 Uncharacterized WD repeat-containing protein K04G11.42045e-015
Q8YTC2 Uncharacterized WD repeat-containing protein alr28001982e-014
Q00808 Vegetative incompatibility protein HET-E-11902e-013
P49695 Probable serine/threonine-protein kinase pkwA1741e-011

TrEMBL top hits (Blast detail)Scoree value
Q8RXP4 Putative WD-repeat protein21976e-245
Q8LG28 WD-repeat protein-like21681e-241
B9GHK2 Predicted protein18033e-199
B9N5K3 Predicted protein18024e-199
Q94AB4 AT3g13340/MDC11_1317666e-195

Arabidopsis top hits (Blast detail)Scoree value
AT5G56190.1 WD-40 repeat family protein21982e-247
AT5G56190.2 WD-40 repeat family protein21777e-245
AT3G13340.1 WD-40 repeat family protein17672e-197
AT1G55680.1 WD-40 repeat family protein17403e-194
AT1G78070.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G36070.1); Has 110 Blast hits to 110 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).13272e-146

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
86  32%
 
102  11%
 
91  5%
 
126  32%
 
64  21%

Unigene MembersMember information