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Information for unigene UN21610
| FASTA Sequence |
| Unigene ID: UN21610 | Length: 1696 |
| SNP | GACTTCGAAGAAGATTCAGCCAACCTCTTCCGCTATGGTGTCCTCTAGAAAGCCTGTGATTCTTGCTGATGGTACTTATGCTACCC
AAAGCGCGGCCTCTGAAACCACATTCTCAACACCAACAGTTGTTCAGGGAGCATTGACTTCTGGAAATTTGAGAGCACTGCTTCTA
ACTGGCGATTTTTTCCTAGGATCAGTGGTTGCTTGCACGTTGACCAAACTTGTTCTCAGGTTGGAGGAGGTTCAGTCATCCAAAAC
TGAAGTGAACAAGACAGTCACACAGGCTTTGCTGATCATGGTTTCCATGTTGCAACTGGGGCAATCTCCTGCTTCCCCACACCCTA
TTGATAATGATTCTTATGAGAGGATTGTGTTGTGCATAAAATTGCTTTGCCATAGGAAAGATGAGATGAAAAAGATATGGTTGGAA
TCCTGCCGCCAGAGTTTTGTCAAGATGATTTCTGAAAAACAACTTAGAGAGATGGAGGAACTTAAGGCAAAGACCCAGACAACTCA
TGCTCAACCTGATGATCTAATTGACTTCTTCCATCTAAAGAGCCGGAAGGGAATGAGTCAACTTGAGTTGGAAGACCAGGTACAAG
ATGACTTGAAGCGTGCTACCGGAGAATTCACCAAGGACGAGAACGATGCGAACAAACTCAACCGTATTCTTCAGCTCACAGGATTC
AGTGATCCAGTCTATGCTGAAGCATATGTGACAGTCCATCACTACGACATCGCACTCGAGGTTACCGTTATCAACCGTACAAAGGA
TACTCTTCAGAATCTGTGCTTGGAGTTAGCAACCATGGGTGATCTCAAGCTTGTTGAGCGTCCTCAAAACTATAGCCTTGCACCTG
CAACGAGCATGCAGATAAAAGCAAACATCAAGGTCTCGTCCACAGAGACCGGAGTCATATTCGGGAACATCGTCTATGAGACATCA
AATGTTATGGAGCGAAACGTGGTGGTACTTAACGACATTCACATCGATATCATGGATTATATCTCCCCTGCTGTTTGCTCGGATGT
TGCTTTCAGAACCATGTGGGCAGAGTTTGAATGGGAAAACAAGGTTGCTGTGAACACCAAGATTGAGAACGAAAGAGAGTTCCTCG
ACCACATTATCAAATCCACAAACATGAAGTGTCTCACTGGCCCATCTGAACTAGACGGAGAATGTGGGTTCCTTGCAGCAAACTTA
TACGCAAAAAGTGTGTTCGGTGAGGATGCTCTAGTGAATGTGAGTATCGAGAAGCAAACAGACGGAGCATTGAGTGGCTACATAAG
GATAAGGAGCAAGACGCAAGGGATTGCTCTAAGTCTTGGGGACAAGATCACCCTCAAACAAAAGGGTAGCAGCTGAGGCTTGGAAT
GGTGGGGCACAAGGTAACAGGTTTAAACCACGTTTGTTTGTTTCTCTCTTGAGGAATTTTTTTGTTGGTTTAACCTGTTTACTACG
GAGGGAAGCGTTTAAGCAAAATAATGTAGAGATTTATCGTTTATCACTCTTTGGCCGGTATAGTTTCCGGTATGGTACGGATGGAT
TCTTACTCATACAGCTGAGTGTGTTCTTCGTTTTATAGTACTTGGACGATCTCGTGTTATTTGTAATGTCTTTTTTTTTCTTTATA
TGATGTCATTTTGTTGGGGAGATTAAACCATAATTTCAGGAAATCCTTTGTCGTTTTCTAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAB45907 putative protein [Arabidopsis thaliana] | 2225 | 5e-248 |
| NP_194876 coatomer subunit beta-1 [Arabidopsis thaliana] | 2225 | 5e-248 |
| NP_194877 coatomer subunit beta-2 [Arabidopsis thaliana] | 2190 | 6e-244 |
| XP_002515343 Coatomer subunit beta, putative [Ricinus communis] | 1977 | 3e-219 |
| XP_002866181 coatomer subunit beta-1 [Arabidopsis lyrata subsp. lyrata] | 1973 | 9e-219 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SV21 Coatomer subunit beta-1 | 2225 | 2e-249 |
| Q9SV20 Coatomer subunit beta-2 | 2190 | 2e-245 |
| Q53PC7 Coatomer subunit beta-1 | 1891 | 1e-210 |
| Q0JNK5 Coatomer subunit beta-2 | 1864 | 2e-207 |
| P23514 Coatomer subunit beta | 1071 | 1e-115 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RNM4 Coatomer subunit beta, putative | 1977 | 2e-219 |
| A5AHP0 Putative uncharacterized protein | 1968 | 2e-218 |
| B9N680 Predicted protein | 1968 | 2e-218 |
| B9ILF4 Predicted protein | 1952 | 2e-216 |
| B8BJD1 Putative uncharacterized protein | 1891 | 2e-209 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G31480.1 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative | 2226 | 1e-250 |
| AT4G31490.1 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative | 2191 | 2e-246 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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