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Information for unigene UN21615
| FASTA Sequence |
| Unigene ID: UN21615 | Length: 1497 |
| SNP | AACCCGAAGAAAAATATAAGATATTATCATCATCAAAACTAAACAAGAGATGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGT
CTCATAAAAAAAACATGCTTATAATTAGATAAAAGGAGAAATAAACATGATGAAAAATCCCTGAAACATGGTATTAAATAAGTTTA
GAAATGATAAAAGGAACCTAACCTCGGGAGATATAGATTCAACTTTAGCCGCTCGAGTTAACAGAGTTCCAGAGCTGGACCCACTT
GACCATAGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTGAACCCAACTGCTCTTTCACCGCTTTAGCAAGCTCAACCACACAAT
CTTCAACCTTAACCGCAGTCTCAGGCAACTTCAAAGACTCGAAAAACGGAACACTCTTCTCCATCAGCTTCATCCCTTCCCATTTC
TTCCTCAAACTCTCCACAGCATCTCCCCTCTCGTTCCTCCACACATAAGGCAGACCAGTTTTCACACCGTAACCCAAATGGTCAGA
GATGTGTTTCAGACACATCCCACACCAAACATCTTCAAGCGTTTCCCATCTCACTTTCCCTTCACCAGCAATTCTAAGCGCAGGCA
CCAAAGCTGGTCCCACCAACTCACGGTTAAAAGCGATGTTGATCCCGCTTATCGGCAACATAGCTTTCAAGGGAACGGTCATAACC
GCATCAACATAGGAAGTGTTCCTCTGCTCTGTCTTGAGAGCTTGCGTCGGAGCATCAAGATCAGCCAAGTTAAGCCAAAGTCCACA
GGAAGCAGCACAGGGGACGCCACTTCTAAGGCTGAACGGGTACCCACGCACAAAATCAGCTCCCTCGCAGTAAGGATCGTAAAGGG
TATTGAAGAAGAGAGGCGTGGCAGGGTTCTCGAGGTTGGTCACGTGCTGAGAAACAGCATCCACTAGAACTCCCTTGGGATCCTTA
GCGGGAACACAGTCATCATCGATGGAGACAATGTACTTCTTTTTGGACACGAGGTAACCGAAATATCTGCAGGAATAGCCAGAGAA
GATGGCGGCATTGGCAGCGCCGACGACTTTCTCAATGTCGGGCTTGGAGTAGACGTCCACATCAAAGCCTTCGGGTACGTTGAGGT
CGTCCTTGAGCTCAGGGTCTTTGACGATAATGAGATGGAAACCAGAGAAAAAGGGTTTCCAGCTGTTCAGGAACTTAGTGAGGTCA
GCGTTGAGGGCACCAATGACGATGTCAACCTCGTTCTTGTTTATCTCAGACGACGACATGTTTGAATATCAACAGATTTTAGGCTT
TGCTCAAAATCTTCTGGAGAGAATGCAGCAGAATAGATCCGAGCTTTTCTTCTTCCTTTTTTTTCCAGAGGGATGGATAAAGACGA
ACGAACCGTGTGTAATGTATGTATTGGCTTTGTGGATTTATCACGTTTCTGTAGAATTGGTCTCGCGCATTTGCTGCTGTGTCCCT
CCCGCAATTCCCTCTTCGATCGTCCCGTTTCGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002871721 hypothetical protein ARALYDRAFT_488506 [Arabidopsis lyrata subsp. lyrata] | 1748 | 9e-193 |
| NP_197155 alpha-1,4-glucan-protein synthase family protein [Arabidopsis thaliana] | 1740 | 8e-192 |
| ABD28560 Alpha-1,4-glucan-protein synthase (UDP-forming) [Medicago truncatula] | 1375 | 2e-149 |
| XP_002332719 predicted protein [Populus trichocarpa] | 1370 | 6e-149 |
| XP_002325896 predicted protein [Populus trichocarpa] | 1367 | 1e-148 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O04300 Alpha-1,4-glucan-protein synthase [UDP-forming] | 940 | 2e-100 |
| Q8RU27 Alpha-1,4-glucan-protein synthase [UDP-forming] 2 | 932 | 2e-099 |
| Q9SC19 Alpha-1,4-glucan-protein synthase [UDP-forming] 1 | 909 | 7e-097 |
| P80607 Alpha-1,4-glucan-protein synthase [UDP-forming] | 892 | 7e-095 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FFD2 Amylogenin | 1740 | 5e-192 |
| Q2HV87 Alpha-1,4-glucan-protein synthase (UDP-forming) | 1375 | 1e-149 |
| B9NBT1 Predicted protein | 1370 | 4e-149 |
| B9IQ01 Predicted protein | 1367 | 9e-149 |
| B9RFU2 Alpha-1,4-glucan-protein synthase [UDP-forming], putative | 1340 | 1e-145 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G16510.1 reversibly glycosylated polypeptide, putative | 1741 | 2e-194 |
| AT5G16510.2 reversibly glycosylated polypeptide, putative | 1741 | 2e-194 |
| AT3G02230.1 RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) | 916 | 1e-098 |
| AT3G08900.1 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3); transferase, transferring hexosyl groups | 913 | 2e-098 |
| AT5G15650.1 RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups | 908 | 8e-098 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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