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Information for unigene UN21625

FASTA Sequence
Unigene ID: UN21625Length: 1231  SNP
GGTCGTCAGTGTGCACGACCGAGAGAGAGATGGCGGCGAAATCGATGGCGACGCTTGATTCTGGCACAACCTGCTCCTCATGGAAC
TACTCCGGCCACCGATTAGCCGCCGGATCCATAGACGGAACCCTCTCCGTTTACGACTCTCCCGTTCCATCTTCCTCTTCTTCTTT
CACTAGCAGTTCCAAAGTTAGGGTTAGCGAATCGAGTCTTGTAAAGATCCTCTGGCTTCCTTCGGAATACGGCGATGCAGTCGCCT
GCATTTGCGAAGACGGCAGCTTATCAATTTGGGAGGAGGTCTCTCAAGACACGCATGCTCTTGAGTGGAAACTGCGTAAGAGCATG
ATGAACAAGTCTACCCAAGTGCTTGATGTTCAGTTTGGGGTCTCCAAAAAGAGTCTAAAGATGGTTGCAGCATATTCAGATGGGTA
CATTAGGGTCTTTGAGCTATTGAATCCATTGGAACTGAAAAACTGGCAACTTCAGGCTGAGTTTCAGAATGTTATTGATTCTCTGT
CGGCTCTGGGCAAACCATCAACCCTGTCTGCATCTGTTTCTTGGAATCCAATGAGGAGTGGGGAGCAAGAACCCAGCTTTGTTTTA
GCTTTCAACTCTGATTCTCCTCATCTTAATTCTTCCAAGATCTGGGAGTTTGACGAAGCTCATAACAGATGGTTGGCTGTAGCAGA
ATTAGCCTCACCAGAAGACAAAGGTGATCCAGTTTATGCTGTCTCGTGGGCCCCAAATATTGGCCGACCATACGAGGTTGTTGCTG
TTGCAACTCATAAAGGCATAGGGATATGGCAAGTTGGTCTGGCTCCTGACCTTGATGGAAGGCTTCCTGTAAAGAAGGCCGCCTCG
CTTTCTGGTCATCAAGGCGAGGTTTGGCAGATGGAATGGGACATGAGTGGCATGACTTTAGCTACCACTGGAAGCGATGGGATGGT
CAGATTGTGGCAGTCCAACTTAAATGGTGAGTGGCACGAACAGGCCATGCTCGAACCAGTCCCCTCCTGAAGATTCCGGACTCACT
TATTTAGAGTTTAGTTCGATGATTCATATCTTTCAATGTGAGTTAAAAGGTTTCTAAGCTTTCTATTGTATAACAAATCATATCTT
ACAATGGTTTCAATTTCATCTCGGTTTTGACGTTTTTAGAACAGGATAAGACAACTGAACCATGTTTGATGAAAGTTAAGATATCC
TTAAACCCGTAATAAAACCAGTTTTGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002887895 hypothetical protein ARALYDRAFT_474917 [Arabidopsis lyrata subsp. lyrata]15264e-167
NP_564830 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]15246e-167
AAM65032 seh1-like protein [Arabidopsis thaliana]15174e-166
AAG59882 seh1-like protein [Arabidopsis thaliana]15131e-165
AAG51710 unknown protein; 62092-56687 [Arabidopsis thaliana]14502e-158

Swiss-Prot top hits (Blast detail)Scoree value
Q4FZW5 Nucleoporin seh1-A2133e-016
Q5U4Y8 Nucleoporin seh12133e-016
Q6GNF1 Nucleoporin seh1-B2124e-016
Q8R2U0 Nucleoporin SEH12025e-015
C1BK83 Nucleoporin seh12017e-015

TrEMBL top hits (Blast detail)Scoree value
Q93VR9 Putative uncharacterized protein At1g6435015244e-167
Q8LB12 Seh1-like protein15173e-166
Q9C5X7 Seh1-like protein15138e-166
Q9C7V9 Putative uncharacterized protein F15H21.214502e-158
A5BBL2 Putative uncharacterized protein12289e-133

Arabidopsis top hits (Blast detail)Scoree value
AT1G64350.1 SEH1H; nucleotide binding15252e-169
AT2G30050.1 transducin family protein / WD-40 repeat family protein1407e-009
AT3G01340.1 protein transport protein SEC13 family protein / WD-40 repeat family protein1381e-008
AT3G01340.2 protein transport protein SEC13 family protein / WD-40 repeat family protein1381e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
105  38%
 
201  8%
 
122  15%
 
93  23%
 
62  15%

Unigene MembersMember information