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Information for unigene UN21642
| FASTA Sequence |
| Unigene ID: UN21642 | Length: 1308 |
| SNP | GTGGGCAGGAAGGGTGTGGTGGCACTTGAGGAGGGTAGAAGTGCCGAGAACGCACTCTACGTTGTGGAAGGAATGCAATTTGACCG
TGGTTACATCTCCCCTTACTTTGTGACAGACAGTGAGAAAATGTCAGTTGAGTTCGACAATTGCAAGTTGCTTCTTGTTGACAAGA
AAATTACCAATGCAAGGGATCTTGTTGGTGTTCTGGAGGATGCGATTAGAGGAGGATACCCAATTTTAATTATTGCAGAAGACATT
GAGCAGGAGGCTTTGGCGACCCTTGTTGTTAACAAGCTTAGAGGCACACTGAAGATTGCAGCTCTCAAAGCTCCAGGTTTTGGAGA
GCGCAAGAGCCAGTACCTTGATGATATTGCCATTCTCACTGGAGCAACTGTGATACGTGAGGAAGTTGGTCTTTCACTTGACAAAG
CTGGAAAAGAGGTTCTTGGTAATGCCGCAAAGGTCGTCCTCACGAAGGAGACTTCGACCATTGTAGGTGATGGGACAACACAAGAC
GCAGTGCAAAAGCGTGTTACACAGATTAAGAATCTTATTGAGCAAGCAGAGCAAGATTATGAGAAGGAAAAATTGAATGAGAGAAT
TGCAAAGCTCTCTGGTGGAGTTGCTGTTATTCAGGTGGGAGCACAAACAGAGACAGAACTCAAAGAGAAGAAACTGAGAGTTGAAG
ATGCTCTTAATGCTACAAAGGCTGCTGTTGAGGAAGGTATTGTTGTTGGTGGTGGTTGTACTCTCCTTCGGCTTGCTTCCAAGGTT
GATGCCATTAAAGCCGCCCTTGAAAATGATGAAGAAAAGGTAGGAGCGGATATCGTGAAAAGAGCACTGAGTTACCCTCTGAAACT
TATTGCCAAGAATGCTGGAGTTAATGGAAGCGTAGTTAGCGAGAAGGTGCTTTCTAACGATAACGTGAAATACGGCTACAATGCTG
CAACCGGCAAGTACGAGGATTTAATGGCTGCAGGAATCATTGATCCAACAAAGGTTGTGAGATGTTGCTTGGAACATGCAGCTTCT
GTTGCAAAGACATTCTTGATGTCAGACTGTGTCGTTGTTGAGATCAAGGAACCTGAGCCAGTTCCTGTAGGCAACCCAATGGACAA
CTCAGGATACGGATACTGAGGAGAGAGGGGAACAATGTAGCTCTACCGGAAACAGATTCCTTTTGAGCAATAGATGAGAACTAAGT
GTAATGACTTTGAACAAGAGAATGTGATGTGTGTACTGAAATTTTGAATCAATCTTATGAATAAAATCTTGATTCCTTGATGTTTG
GAAATAGTTTATCCTGAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_175945 RuBisCO large subunit-binding protein subunit beta [Arabidopsis thaliana] | 1835 | 6e-203 |
| XP_002894506 CPN60B [Arabidopsis lyrata subsp. lyrata] | 1835 | 6e-203 |
| NP_187956 TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] | 1796 | 2e-198 |
| P21241 RecName: Full=RuBisCO large subunit-binding protein subunit beta, chloroplastic; AltName: Full=60 kDa chaperonin subunit beta; AltName: Full=CPN-60 beta; Flags: Precursor | 1779 | 2e-196 |
| XP_002523404 rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] | 1742 | 4e-192 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P21240 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 1835 | 3e-204 |
| P21241 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 1779 | 8e-198 |
| P08927 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 1724 | 2e-191 |
| Q43831 RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) | 1651 | 6e-183 |
| Q42693 RuBisCO large subunit-binding protein subunit beta-1 (Fragment) | 1291 | 3e-141 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DFS9 AT1G55490 protein | 1835 | 4e-203 |
| Q9LJE4 GloEL protein; chaperonin, 60 kDa | 1796 | 1e-198 |
| B9SBN5 Rubisco subunit binding-protein beta subunit, rubb, putative | 1742 | 3e-192 |
| B9GXY0 Predicted protein | 1732 | 4e-191 |
| A9PF58 Predicted protein | 1725 | 2e-190 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55490.1 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 1836 | 2e-205 |
| AT1G55490.2 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 1836 | 2e-205 |
| AT3G13470.1 chaperonin, putative | 1797 | 6e-201 |
| AT5G56500.1 ATP binding / protein binding | 1688 | 3e-188 |
| AT5G56500.2 ATP binding / protein binding | 1688 | 3e-188 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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