RadishBase

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Information for unigene UN21668

FASTA Sequence

Unigene ID: UN21668	Length: 895	SSR	SNP
CGAAGCCATGGTTAATACGGAGCTAGTAAAATATTGGGAAACTGTATAACCTTAGCTAAGGTTGATGTTGTTCTCGTAAAAAAACA AAACATCAAATATTTGAAAACAGATGACTAAGGTTGAGATCCGGACAAAAGCTCCATAAAAGTTTAGAGACATAAAAAAGGAGATC TCCTCCAGAATGATTGATTCACACGACATTTGACTTCGTTCCTCAATCTAGTCGTTCCATCTTCCAGAGACCGTCGTTGAGGTAAT GCATGTTGTCCACTCCGATTCCTTTGTTGATGCTCTTAATGTCCTTGGCTGACATTTTGGTGAAGCCTATTGCTAAGGCATGCTGC TTTCCTTCTGCATATATAGCCACAGGCCTTTCTGCCTCAACTTCTTCATCCAGAACACCTCCAGGAGATGTGAGACCAGGACACAT TATGTTGGCACCAGAGAAAACAAACTTTATAGCACCTCTATCAACTTGAAACCTCTTCATTATATTTGGGTACTGATGAAGAAGAC GCAGAGTTGGCATGTATGGCCCATCACGGATACAGAAGAAGAGAGGGACATTGTTGACAACAACTAGCGTCAGATGGTTTGGGCAC TTGACTACAATGAGAGGAGACTTTTTGGGAAGTAGATCCTCCAACACCGTTTCAAGTCCCGGGTACTCTTCTTGAATACTCTGGCG AATCCTACGTTGGACAGAAGCCTTTACTTGGTTTTGCGATGAAACCTCCTCCATTGAAAACTTCTTGAACATGTTGGATGATGAGA GGTTATTTCTTTTGGTAAGTTTATGAGATTTGGTCGATGCAGCTGGAATACAACCGGAGAGAGAGAGAGAGAGGATGCGTTTCCGA ACCGAGCGAGAATGTTTCTCTGCGTCCAGTTCCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172387 pseudouridine synthase and archaeosine transglycosylase domain-containing protein [Arabidopsis thaliana]	907	1e-095
XP_002889734 pseudouridine synthase and archaeosine transglycosylase domain-containing protein [Arabidopsis lyrata subsp. lyrata]	903	4e-095
XP_002319503 predicted protein [Populus trichocarpa]	843	4e-088
XP_002330175 predicted protein [Populus trichocarpa]	839	1e-087
BAJ89252 predicted protein [Hordeum vulgare subsp. vulgare]	830	1e-086

Swiss-Prot top hits (Blast detail)	Score	e value
Q86KL4 Malignant T cell-amplified sequence 1 homolog	518	8e-052
Q5PPY1 Malignant T cell-amplified sequence 1-A	511	5e-051
Q9DB27 Malignant T cell-amplified sequence 1	511	5e-051
Q2KIE4 Malignant T cell-amplified sequence 1	510	7e-051
Q9ULC4 Malignant T cell-amplified sequence 1	510	7e-051

TrEMBL top hits (Blast detail)	Score	e value
Q8L7N2 Putative uncharacterized protein At1g09150	907	9e-096
A9PAN0 Predicted protein	843	2e-088
A9PCQ5 Predicted protein	839	7e-088
B8Y453 MCT-1	827	2e-086
Q4QXS6 MCT-1	827	2e-086

Arabidopsis top hits (Blast detail)	Score	e value
AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	908	4e-098

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			17%


6	4			33%


9	4			33%


8	2			17%

Unigene Members	Member information