RadishBase

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Information for unigene UN21692

FASTA Sequence

Unigene ID: UN21692	Length: 1279	SSR
GGTCAAACATTTCTTTTATCGGTTTATTAGTCAAACAACATCAGAGGAGATCGAAGGTTGAATTGTGTTTGACGCTTTTAACAGTA AAGTTGACATCTTTACATACAACAACAACAAAGAAACTCTCTTTTTTTTCCACATAGAAATGAGAAATGGAAGAACGAATCTTTTT AAAAGCTTTAGCTTTGTTGAGATTTTGCAGCTTTCAGTGCCTCAATAACCGCAGAGAAGTCTTCATCACTCAAGCCATAAGACTTG GCAACTTTGTAAAGCTCGTTTGCTGCAGCCGCAATTGGAGTTGACTGAGAGACTGACTCAGCTAGTCCCAGTGCCAGTCTCATATC CTTCTGCTGGTGCTTCAATGGGAAAGCTGTAGGGTACACTGACTTGATCATTGAAGGACCCTTAAGCGAGTACATTGGCGCATTGA TGGCTCCCTGTGAGACAACTTCGACCAGTACATTTGGATCAAGCCCTACTTTCTGGCTTAAAAGTATTCCCTCAGCGAATGATGCC ATCATACTTCCCATGATCATGTTGACGACAAGTTTCATTGCTGCTCCATTACCAACATCACCCAAATAGATCTTGACTTCCCATGA TGTCTAAGTAAGGAGCAGCTTTTTCGTATAGTAGCTTATCACTGCAGTGAGGAATATTAACTGACCATCTTCGGCAGGCTTTTTGG AACCGGAAACTGGTGCCTCCAAAAACAATGCTCCCGTATCCTTTATTTGCTTGCTGATTAACATCGACGAGGCAGCATCAACGGTT GAGACATCAACATACCCTTTTCCTGAACTAATTCCAGATACGGCTCCATTCTTTCCACAAGCAACATCGATTGCACTCTCAGGATC TGCTAGCATTGCAAATGTGAGATCGCAAGTTGCAGTCACTTCTTCAGGAGAAGACTTGTATTTTGCTCCTAATCCGATGAGAGGAT CACATTTGCTCTTAGTTCGGTTCCAAACAGACACATCACACCCAGCTTTGATGAGGTTCTGTGCCATTGGAGAACCCATGATTCCC ATACCCAGAAACCCAATGCTTACACTTCCAAGTTCATCTTTGGTAGAGGGAGTAGGTTGCAGAGAAGAGTAAACCCTATAAGAGAG GGGAAACATAGGTTTTGAGAAGAAAGGAGAAACGGGTTTAGGTCTGAATCGAACAGGGATACGAGGGCAGAAGATCGAGCACAAAG CCATCGCTGTTGGACAAGAAGAAGAAGAAGAAGATGAAGATAATGGTAACACAAGGCAGTGGCCAGTGTGCCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_564030 glyoxylate reductase 2 [Arabidopsis thaliana]	1516	6e-166
XP_002892961 hypothetical protein ARALYDRAFT_471975 [Arabidopsis lyrata subsp. lyrata]	1496	1e-163
AAM13134 unknown protein [Arabidopsis thaliana]	1491	5e-163
XP_002280297 PREDICTED: hypothetical protein [Vitis vinifera]	1231	6e-133
CBI35963 unnamed protein product [Vitis vinifera]	1213	8e-131

Swiss-Prot top hits (Blast detail)	Score	e value
Q5ZLS7 Putative oxidoreductase GLYR1	587	1e-059
A4FUF0 Putative oxidoreductase GLYR1	585	2e-059
Q5RKH0 Putative oxidoreductase GLYR1	584	3e-059
Q49A26 Putative oxidoreductase GLYR1	579	1e-058
Q562D5 Putative oxidoreductase GLYR1	578	1e-058

TrEMBL top hits (Blast detail)	Score	e value
Q8RWF1 At1g17650	1491	3e-163
B9S5X5 3-hydroxyisobutyrate dehydrogenase, putative	1175	1e-126
B1Q3F7 Succinic semialdehyde reductase isofom2	1169	7e-126
B9MWT8 Predicted protein	1091	7e-117
C5XNS6 Putative uncharacterized protein Sb03g025830	1079	2e-115

Arabidopsis top hits (Blast detail)	Score	e value
AT1G17650.1 GLYR2 (GLYOXYLATE REDUCTASE 2); glyoxylate reductase (NADP)/ phosphogluconate dehydrogenase (decarboxylating)	1517	2e-168
AT3G25530.1 GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating)	751	1e-079
AT3G25530.2 GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating)	547	5e-056
AT4G29120.1 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	342	3e-032
AT1G71170.1 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	288	5e-026

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			40%


12	2			40%


11	1			20%

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