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Information for unigene UN21696
| FASTA Sequence |
| Unigene ID: UN21696 | Length: 1454 |
| SNP | CGACTGAAATCATCTTCCTCATGCTATTATATAAGAACAAAAAGAAGAAAACATATACATATTATTCTAGTATGTATCAGAAATAG
TACAAACGCCACAACCCTGAGCCAAAAAACCACAGCTATGGCCCATAATCATTTTTTATACCGCCGATACATACACAACCTTAGCC
TAAACATCTTTTCGGCATCATCATAGTAATCATTTCATCACATCGCATACAAACATAAACCATTGGGTCGAACCATGCCACAATCT
CTCTTTCTAGTGAGTGAGAGCCACTGCAGCTTCTTGAACCAGAGGCTGAGTAACATGCACAAAATGCTCAGCTTCACGCTCCACTT
CTTCCCGACACCTATCAGAGTCTCTCCCTTCACCCATTTTTTTCACAAACCCTACAAACTTCCCCCAGTTATCCGCCTTAAACAGC
TCCGGGTTCATCCTCAGGTACGTAAACGCACACATCTCTCTGTTTTCTCCCTCTTGGTTCTGATCAAAGCTCAGTGCAGACGCCTT
GAGGATCTGCTCGTGCGCGTAGTCATCGTACCTAGGCAATGCGTTTTCACCAGCCAGAGGAACTTCTGCAGCTAGAGTAGCTAGAG
CCACCTGGTTCACTAGCTTCTCTGGTGCACAAAGCGCGTCTTGAGGCTGCTCGTGGTCTCTCATCTCGATGCACGTGAAGTTGAAT
ATGGCGTTGTGTCTGGCTAGCATTTGAGCGATCGGGAGGTATCCGTCTCTGAACCTAGTGTTATAGTATCCTGCTGTGAGCTCAGG
GGCGTGAGAGCGTGTCCCGTAGTGCCAGTGGATTCCAGCGACTTTGACCGAGATTTTGACACCTGTGTCTTGGAATATCGATTTGG
CTGAGGAAAGGATACGCTCGCCGTGATCCAGCAACATCTGGGAGTACCACGTGAGGAAGAACTCTCCGTACTCTGTGTTCCAACCA
CCGTCTTCCTTTTTGAAGAACTGAGTGTCTTCCGGCCAGTTATTGTAGTGACCAGCATCAGTTGGGCCAGTACCGCCCCACTCTGG
CTCTCCATAAGATTCAGCTGCTGCTTTCAAGCTGCTCAACGAGTACTTGTCATAACACTGGAAGGCTCCAATCCCCGGGAACCTCC
ATGTTCCGTCTTGCTCGGGGTATGAAGGATAACGCAGCTCTCCTGCGGGTCCCATTCCCACTTGGATTTCCACAATGGTGTCTCCG
AGAAGATGCTTGAAGTTGTCTCTGAAAGCACGCATGAAATCGGAATAGCATTGGACGGGTGTTCTACCTTTGAGAACAGGGAGTGT
ATCAGCGCCAAGTGAGATATACTCGTGGTTCCTTCTTCCCCACTGATCAGTGTATGCAAGATCTGGATCCTTGTCAACCTCTTCAA
CAACCCACTGAGGCAGAGGAATAGTGACAGAGTCACCAACGTTACCACCGCACTGATGAAACGACATAACAGCCTGAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189034 beta-amylase 1 [Arabidopsis thaliana] | 2052 | 5e-228 |
| XP_002885629 beta-amylase 7 [Arabidopsis lyrata subsp. lyrata] | 2018 | 4e-224 |
| AAL37169 putative chloroplast-targeted beta-amylase [Brassica napus] | 2007 | 8e-223 |
| XP_002518196 Beta-amylase, putative [Ricinus communis] | 1861 | 7e-206 |
| XP_002314522 predicted protein [Populus trichocarpa] | 1853 | 6e-205 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LIR6 Beta-amylase 1, chloroplastic | 2052 | 2e-229 |
| O23553 Beta-amylase 3, chloroplastic | 1249 | 3e-136 |
| O22585 Beta-amylase | 975 | 2e-104 |
| P10538 Beta-amylase | 964 | 3e-103 |
| O65015 Beta-amylase | 962 | 5e-103 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W2D8 Beta-amylase | 2007 | 5e-223 |
| B9RWS7 Beta-amylase | 1861 | 5e-206 |
| B9HSW9 Beta-amylase (Fragment) | 1853 | 4e-205 |
| Q1L5W8 Beta-amylase | 1836 | 4e-203 |
| A5AJ10 Putative uncharacterized protein | 1821 | 2e-201 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G23920.1 BAM1 (BETA-AMYLASE 1); beta-amylase | 2053 | 1e-230 |
| AT4G17090.1 CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase | 1249 | 2e-137 |
| AT4G15210.1 BAM5 (BETA-AMYLASE 5); beta-amylase | 937 | 3e-101 |
| AT2G32290.1 BAM6 (BETA-AMYLASE 6); beta-amylase/ catalytic/ cation binding | 914 | 2e-098 |
| AT4G15210.2 BAM5 (BETA-AMYLASE 5); beta-amylase | 891 | 7e-096 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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