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Information for unigene UN21714
| FASTA Sequence |
| Unigene ID: UN21714 | Length: 730 |
| SNP | TTTTTTTAAGAGTAAAAGTTGGATCAACTTCACAACACGGTTTGTAGATATGTTAAAAATTTCCAAGAAAGACAACATAAAATACA
TGAAAAGTCTCACTTCATTTTCAAACGAACGAATCAAACAAACAAAAAGACTCTCAAAGAAGACATTACATTTTCACGTCAATCAA
AAGAAACTTTGTTTAGTAGTAAGTAGGTTCAGAGGTGTAGAAAAAAGGACCAGCCCAGTAAAGCTTGAAGCTCTTGTCTTCAAGAA
CACGGTACTTGCTCAATGACATTCCTCTCACACCTTTGTTCACATCGGTCGGGAAATCGCAATCAGCGATTGGAGACTTGTAAAGG
AAAACTTTGCACTTGGTCACCGTCCTTCCTGCACGAAGCTGTGAAGGGAATAACGTGGCGAAGAAGTAACCTTTAGCATCAGTTTT
GCTGCTCATTATTGAGATTGGAACTATCTCTTTGCCATATGCGTCTGTCTTTACACATGCGATTCTTGCCGTAGCACCTTGAATTG
GGTAAGATTTGTCACCGGACTTGCACATGATGACACCTTCAACGGCGACAGGAATAAATTTTCCGGTCTCGGGGTTGACTTCATTG
CCGTAGTTAGCAACTGAGGATATGATTAGGGATGAGAAGACAACGAGAGAAGCAGCAAATGAAAGGCGTGAGAAAGCCATTTCTTT
TTAGGGGCTTGCTTTGCTTATGTGTTGGATTGTAGAAAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002872848 pollen ole e 1 allergen and extensin family protein [Arabidopsis lyrata subsp. lyrata] | 798 | 4e-083 |
| NP_192136 protein root hair specific 13 [Arabidopsis thaliana] | 760 | 1e-078 |
| XP_002523122 structural constituent of cell wall, putative [Ricinus communis] | 360 | 2e-032 |
| XP_002302729 predicted protein [Populus trichocarpa] | 332 | 4e-029 |
| XP_002523123 structural constituent of cell wall, putative [Ricinus communis] | 330 | 7e-029 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O81417 At4g02270 | 760 | 7e-079 |
| B9SAV3 Structural constituent of cell wall, putative | 360 | 2e-032 |
| B9GSD1 Predicted protein | 332 | 3e-029 |
| B9SAV4 Structural constituent of cell wall, putative | 330 | 5e-029 |
| C6T5T7 Putative uncharacterized protein | 327 | 1e-028 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G02270.1 pollen Ole e 1 allergen and extensin family protein | 761 | 3e-081 |
| AT2G47540.1 pollen Ole e 1 allergen and extensin family protein | 307 | 2e-028 |
| AT3G62680.1 PRP3 (PROLINE-RICH PROTEIN 3); structural constituent of cell wall | 252 | 4e-022 |
| AT1G54970.1 ATPRP1 (PROLINE-RICH PROTEIN 1); structural constituent of cell wall | 249 | 8e-022 |
| AT2G47530.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: PRP3 (PROLINE-RICH PROTEIN 3); structural constituent of cell wall (TAIR:AT3G62680.1); Has 105 Blast hits to 105 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 247 | 1e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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