RadishBase

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Information for unigene UN21725

FASTA Sequence

Unigene ID: UN21725	Length: 990	SSR	SNP
TCTCAAATCTGTACCTGAAAAATCTCAAACTCTCAGATCTGCCAATACCTCTCTCTTATCGTGACGGTGAAGAGAGAGAGAGAGAG AGATATCGAGAGCGAGAAAAAAATGGCGGCGGTGACACCATTAGCAAAGTTCAAGCTCGTCTTCCTGGGAGATCAATCCGTCGGCA AGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACCTATCAGGCAACGATTGGGATTGATTTCTTGTCAAAGACA ATGTACCTTGAGGATAGGACTCTTCGTCTCCAGCTTTGGGATACTGCCGGGCAGGAAAGGTTTCGAAGTCTGATACCAAGTTATAT CAGAGATTCCTCTGTTGCTGTCATTGTCTATGACGTTGCTAATAGGCAGTCGTTCTTGAACACCTCGAAGTGGGTTGAGGATGTTC GTACAGAGAGAGGTAACGATGTTATAATTGTTCTCGTGGGTAACAAAACTGATCTCGTTGACAAGAGGCAAGTGTCGATAGAGGAA GGGGATAACAAAGCTCGTGATTTTGGAGTTATATTCATAGAGACGAGTGCAAAAGCAGGATTTAACATCAAGCCACTATTCCGGAA GATTTCGGCAGCATTACCAGGAATGGATACACTTTCTTCAGCGAAACAAGGCGATATGGTTGATGTTAACCTTAAGTCATCGAACC ATTCGTCTAATGCGGAGCAACAAAGTGGTGGCTGTTCGTGCTGATTAATCTTTACTAAAAAAATATATACTTTTAACAGCAACAGA GTATGGAGATTTTTAAAAATGATTCATAACTTGATGGAGTAAAATAAACTCTGGTGTAAGGTAAGAGATTTTTACTTGGAGTCTCT AGTATTCTTTAAGATGTTTTGAGTTCAATATGGAGATGTGTAATAATGACACGCTTGCAAGCTTAAGAAGAATGTTTCGCTCTGTT CTGGTTAGTGATTACTCAGTTTTTTTCCTACAGCATACACTGTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002871412 hypothetical protein ARALYDRAFT_487852 [Arabidopsis lyrata subsp. lyrata]	973	4e-103
AAZ67607 80A08_22 [Brassica rapa subsp. pekinensis]	970	8e-103
NP_196588 RAB GTPase H1E [Arabidopsis thaliana]	968	1e-102
XP_002307084 predicted protein [Populus trichocarpa]	951	1e-100
XP_002531261 protein with unknown function [Ricinus communis]	948	3e-100

Swiss-Prot top hits (Blast detail)	Score	e value
O80501 Ras-related protein RABH1B	897	1e-095
Q9SMR4 Ras-related protein RABH1C	840	4e-089
P20340 Ras-related protein Rab-6A	748	2e-078
Q5RAV6 Ras-related protein Rab-6A	748	2e-078
P35279 Ras-related protein Rab-6A	747	3e-078

TrEMBL top hits (Blast detail)	Score	e value
Q4ABP5 80A08_22	970	6e-103
Q9LFT9 GTP-binding protein	968	9e-103
B9H4T8 Predicted protein	951	9e-101
B9SZ42 Putative uncharacterized protein	948	2e-100
A9NSV9 Putative uncharacterized protein	927	5e-098

Arabidopsis top hits (Blast detail)	Score	e value
AT5G10260.1 AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding	969	4e-105
AT2G22290.1 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding	901	3e-097
AT2G44610.1 RAB6A; GTP binding / protein binding	898	7e-097
AT4G39890.1 AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding	841	3e-090
AT5G64990.1 AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding	764	2e-081

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	3			23%


9	3			23%


10	4			31%


12	2			15%


11	1			8%

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