RadishBase

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Information for unigene UN21727

FASTA Sequence

Unigene ID: UN21727	Length: 869	SSR	SNP
GGGAGGTTTCTTACAATTTAGGACCAAAGAACCTCTCAACACACAGTGGTCGAAGAAGAAGAAGAAGACGAGAGAGGAAGTAAGAT CACGAAGCCACTGATAAGTCATGCGAACCTTTGCTGCTCGCCTCGCTAACCATTTTCGGAGAGGGAGAAATGGGTATCCTCGATCT CGGAACTTCTCCTCGTTGACCAAGAAAGATGACCTAACATTGGAGGAAGAAGCTGAGAGGAAAATAGGATGGATGCTGAAGCTTTT CTTTGCTGGGACAGCTACCTATGTTGGATACCAGTTCTTCCCTTATATGGGTGATACTTTGATTCAGCAATCAGTCTCGCTTTTAC ATGTGAAGGATCCCTTGTTTAAGAGAATAGGTGCTTCTAGACTTTCCCGTTTCGCCATTGATGATGAGAGGAGGATGAAGGTTGTA GAGTTGGGTGGGGCTCAAGAGCTTCTTCACATGCTGGGCGCTGCTAAAGATGACAAGACAAGGAAAGAAGCTCTAAAAGCTCTTGC CGCTCTCTCTAAATCAGATGAAGCTGCCAACTTCCTGGGATCTAAAGGAGCACTCTCTATCGTCAAATCGACTCCAGATTCCTCTG AAGATTCAGACATTTCAACTTACAAGTCAAACATACTCAAGAAGCTAGATGATAAAGACCTACCTCTTTCTTCCAACTGAATTTAG TCTTTTCAGAAAATGGATAGGTCCCAGGAATGATTAAGTGAACTCTTGAATTTTTGTCCAAAGGAAAGAAGCAGTCTGATTCTCTA GCTTCTATTCTTACTGCTGAATACTGTTTTGATTCCAATGTTCTTTGTTCAAATGAAATAATGGTTTAAGGAATAAGTTTTAAAGA ATGTGTAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191180 armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	808	4e-084
XP_002878073 binding protein [Arabidopsis lyrata subsp. lyrata]	803	1e-083
NP_001190103 armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	795	1e-082
XP_002274126 PREDICTED: hypothetical protein [Vitis vinifera]	646	2e-065
CBI25401 unnamed protein product [Vitis vinifera]	633	8e-064

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q6NNI1 AT3G56210 protein	808	3e-084
C6T450 Putative uncharacterized protein	567	2e-056
B9HHX3 Predicted protein	566	3e-056
B8ANN0 Putative uncharacterized protein	562	9e-056
B9FA63 Putative uncharacterized protein	562	9e-056

Arabidopsis top hits (Blast detail)	Score	e value
AT3G56210.1 binding	809	1e-086
AT3G56210.2 binding	809	1e-086
AT3G56210.4 binding	809	1e-086

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	4			33%


6	2			17%


12	2			17%


9	4			33%

Unigene Members	Member information