RadishBase

| | | |

Information for unigene UN21728

FASTA Sequence

Unigene ID: UN21728	Length: 1579	SSR
GTTGAGAATGCTGACCCTCAAGCACGAGATGCACTTCGTATTCCCAATTTTGTGGTCCAGCAGCCATTTGATACAGCGAGTTACTA TGCTCAATTCTACCGCTCAGGCCCTGACAGTGATGGCCGTGTTTCTCCCTTTGCTGCGTCTAAATTCAATGGGAATGTTACAGCGT TGCCTCCGCATTCATCTCAAACCATGCAAGAGGTTGGAAACAACTTAGTGCTGTCGACAGCAAGTCCAACTCCACTGGCAACTCAG GCAGCTGGGCTGATGCAGAGCTCTATTCCTGTCACGCAGCAGCCTGTTCCTGTTTTCCGCCCCCCTGGATTACATATGTCGCATTA TCCACCAAACTACATGCCATACGGACACTACTTCTCCCCATTCTATCCACCTCTCCCGACAATGCACCCGTTCTTAAGCAACGGTG CATTTGCTCAGCAACCTCAGGCAAGCGGTGTATATCATACTCCTCCACCCCCGGGAGCTGCAGCAGGAAACAAGTACACGCTTCCT CATTACAAGCCTGGTACTAACACAGGAAACTTGGCTCATGTTGGTATGCCTGGTGGTTATGGACCACCGTATGGTTCCTTTCCAGC CGGGTATAATAATCCCACCTCTGCTGCTTCAGCTGGGAATTCAAATTCCAGTGAGGATCTCAGCACATTGCAGTTGAAGGAAAACA ACGGCTACAACACAACAGGGCAACAGAGTGAAGCATTGCCTGTGTGGATTGCTGGACCAGGACGAGATGTGCCGAGCTCTTTCTAC GGTTTACAGCACCATGGGCAACACGTGACTTACGCTCCAGCGCAAGCTGGCCACGTCGCATTCCCGGGGATGTATCATCATCATCC AGGACAAGCAGTGACAGCAGGAGGAGTTCATCACCCGCTCTTACAACAACAGTCTCAAGGTGGTGGTGTTGCTGGTGGAGCAGAAA TGGTTGCACCCGGTCCTAACGTTTTCCAACAGCCTCAGCAAACACAGATGAATTGGCCAAGTAATTACTGAAACAGGAAGTACAAA GAAGATAAATCTCAAAGAAGAAATCAGGAAGATATGGTGCAGGTTTCGTTGACTTGCGTGTGTGTGTGTTTGTGCCATTTTAACAA ATTACCGAAGAGATGAAGCTTTGAAGCCTGAAGGGATTGACAGAGAGAATGATCATAAAAGGATAGGGGGGAAGGTATTATTTTTT TAATGAATCAAGTGTTTTTTGGTGTTTCTATATCTTTTTTTGTTTCTTATGGTTTTAGCAGAATTTTTACTTTCTTAGTTTTGAGA GAGGTCGTTCTTAGCTCTCTTTATAAGTTTCTGAGCTAAAGCCAAAGAACTTTGCTGCCTGAGTCTGTATCTGAAGACTCTTTGTT CCTTTCTTGGCCTTTTGGTCAATGTTTTCAAATCTGTACCAGCAATCAAATTTGGACCTACTTTCTTGATTGCGGCTCAACTTGAT CCGTTCAAAAATATAAGAAAACTTTAGAAATTGTATTGGCTATACAATCATGGTTATGAACTTGTGATGTAATAGTACTCTTCCTG AAAATTCAATGTAAAAGTGATCTTGAAAGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884662 hypothetical protein ARALYDRAFT_896937 [Arabidopsis lyrata subsp. lyrata]	1492	5e-163
NP_187423 uncharacterized protein [Arabidopsis thaliana]	1469	2e-160
AAF13084 unknown protein [Arabidopsis thaliana]	1469	2e-160
XP_002532215 conserved hypothetical protein [Ricinus communis]	1067	9e-114
XP_002267265 PREDICTED: hypothetical protein [Vitis vinifera]	1064	2e-113

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q0WUY5 Putative uncharacterized protein At3g07660	1504	1e-164
Q9SSE4 MLP3.11 protein	1504	1e-164
B9T1U6 Putative uncharacterized protein	1067	6e-114
B9IAV3 Predicted protein	717	2e-073
A5AXX2 Putative uncharacterized protein	589	2e-058

Arabidopsis top hits (Blast detail)	Score	e value
AT3G07660.1 unknown protein	1505	5e-167
AT1G55820.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: GIP1 (GBF-INTERACTING PROTEIN 1); unfolded protein binding (TAIR:AT3G13222.1); Has 1009 Blast hits to 462 proteins in 111 species: Archae - 0; Bacteria - 42; Metazoa - 245; Fungi - 90; Plants - 135; Viruses - 12; Other Eukaryotes - 485 (source: NCBI BLink).	118	4e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	3			25%


8	2			17%


12	2			17%


11	4			33%


10	1			8%

Unigene Members	Member information