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Information for unigene UN21736
| FASTA Sequence |
| Unigene ID: UN21736 | Length: 1107 |
| SNP | CTCTTATCTGGAAGTAGACACTCTTGTCTGAAGCAAAGACAATCAACACAGGATAGTCGTCATCGTCTTCTTCACTTTGACTCTTA
CAGTATCAATCAATCAATGGCTTCTTCGTCTCCATTGCAAATGGTTCACACTTCTCGCACCATCTCTCAGATTGGTGTGAAGTCGC
AGCTAGTCTCCGCACATCGAACACCTCAATCACTTTGCTTCGGAGCTCGTTCCTCTGGTTTCTCACTTTCTTCAAGACTACACTAC
GCAACAAGCTTCCCTCTTAAGCAATTGTCAGGAGCTTACAAGCTCCAGAGAACAGCTTGTGTCAAATCAATGGCCGCTGAGGAGGA
AGAAGAAGTGCTAGCACCTCCTCAGGCTAAAGTGACGAAAAAGGTTTACTTTGATATTGAGATTGGTGGTGAAGTCGCTGGAAGGA
TTGTGATGGGTCTGTTTGGTGATGTTGTCCCTAGAACCGTCGACAACTTCCGTGCCTTGTGTACTGGTGAGAAGAAGTATGGGTAC
AAAGGTTCTTCCTTTCACCGTATCATTAAGGACTTCATGATCCAAGGAGGTGATTTCACTGAGGGAAATGGTACTGGAGGTATTAG
TATCTACGGTGCCAAGTTTGAAGATGAAAACTTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCTAACGCTGGTCCTA
ATACCAATGGAAGCCAGTTTTTCATTTGCACCGCCAAGACTTCATGGTTAGATGGGATGCATGTTGTGTTTGGACAAGTCATTGAA
GGTATGAACATTGTGAGGAGACTTGAGTCTCAGGAGACGCGTGCCATGGATGTTCCCAAGAAACCTTGCAGAATCTATGCCTGTGG
AGAGCTCCCAATGGAAGCTTGATTAACGTTGGATCTTATTTCTGTTTTTTTTTTCTTTTTTTTTCCATGAGAAGCCAAAGATTTTG
AAGTTTATGTCTCTTTTGTTTCTTCACTATGGATGCATGAGTTAAGAAAGTACAATAAGGTTCTCTCTTACTAGAGTTTCTCTTTA
GGCTTGAACCATGGTTGCAAACGTGGCTTTCTGAACAATGGGCTAGAGCTTAACATCTTTATTTGTCTTTCCAAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001154684 Peptidyl-prolyl cis-trans isomerase CYP20-3 [Arabidopsis thaliana] | 1137 | 4e-122 |
| NP_191762 Peptidyl-prolyl cis-trans isomerase CYP20-3 [Arabidopsis thaliana] | 1126 | 8e-121 |
| AAM63944 peptidylprolyl isomerase ROC4 [Arabidopsis thaliana] | 1126 | 8e-121 |
| AAG40378 AT3g62030 [Arabidopsis thaliana] | 1122 | 2e-120 |
| NP_001190159 Peptidyl-prolyl cis-trans isomerase CYP20-3 [Arabidopsis thaliana] | 1119 | 5e-120 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P34791 Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic | 1126 | 3e-122 |
| Q41651 Peptidyl-prolyl cis-trans isomerase, chloroplastic | 713 | 3e-074 |
| Q9ASS6 Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic | 690 | 1e-071 |
| Q01490 Peptidyl-prolyl cis-trans isomerase B | 617 | 4e-063 |
| P80311 Peptidyl-prolyl cis-trans isomerase B | 598 | 6e-061 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RN18 Peptidyl-prolyl cis-trans isomerase | 811 | 2e-084 |
| C6TJK9 Peptidyl-prolyl cis-trans isomerase | 797 | 8e-083 |
| B9GRV8 Peptidyl-prolyl cis-trans isomerase | 788 | 8e-082 |
| A5B9P8 Peptidyl-prolyl cis-trans isomerase | 771 | 8e-080 |
| C5XHY3 Peptidyl-prolyl cis-trans isomerase | 763 | 7e-079 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G62030.2 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) | 1138 | 1e-124 |
| AT3G62030.1 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) | 1127 | 2e-123 |
| AT5G13120.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | 690 | 1e-072 |
| AT5G58710.1 ROC7; peptidyl-prolyl cis-trans isomerase | 579 | 8e-060 |
| AT2G29960.1 CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase | 571 | 7e-059 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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