RadishBase

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Information for unigene UN21745

FASTA Sequence

Unigene ID: UN21745	Length: 922	SSR	SNP
GGAGACGATGAATAACAATATAGAGTTGAATCTCACTTTGAATCCTTCATCGGCTCCCCCCAATGAAACTCCCCCGAGTAACAACC AAACCCCAAGAAGAAAACGCACTAGGAGAACCTCCAACAACGAAACCGGTTCTTCTTCCTCTCCGAGGCCTAAACCAGACCCTGAT GCTCCCTTAATCACAGAGCCATGCAAAGTATGTGGCAGAAAGTTCTGGTCTTCCAAGGCACTCCATGGACACATGAGATCTCACCC TGAGCGTCAATGGCGTGGCATCAACCCTCCTCCTAACCACCAACCAACCGTGACGGCAGCACCCCCGGTGTCTGTTACAGCGGAAG GCGGTCAAGTGTTGGCTATTGCCTCCACGACCGGTTCAAGTGTAGTAGGAGTTGAATGTGGAGGTTGTAAGAAAGTGTTTGAGTCA CGTCAAGCATTAGATGGACATATATGTTCCGCCATTTTGAACTTAAACGAAGATCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCA AGAGGTCGTTGATGAGAGTAGGAGTGTGATGTCGGCGTCAAGGATGAATCATCGATGTGACATCTGTTCTAAAGTGTTTTATAGTG GTCAGGCTTTGGGTGGTCACATGAGGTGTCATTGGGTTAAGGATAAGGAGAAGAAACAAGCTTCGACTGGTATCGATCTCAATGTT CCTGCGTCGTCGACCAACTTGCAGCCCGGTTCTTCTTCAGACGCAGTGCCAGAGTCTTCTTTGGATCTTAAGTTACGACTCTGACA TTATAATATCTTATGGGTATTGGTTTTTTTCTCTTTATGAAACTCTCTATTTTATGTGTGTGAGTCACACAGTATGACGATTTGTA CGATGAATTTATACCATTGGGGGTATTGCAATAATCTTATTTAAAACTTATTTGTTGACGAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_179309 C2H2-like zinc finger protein [Arabidopsis thaliana]	322	1e-027
XP_002886101 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]	278	1e-022
XP_002279565 PREDICTED: hypothetical protein [Vitis vinifera]	275	3e-022
NP_195254 C2H2-like zinc finger protein [Arabidopsis thaliana]	257	3e-020
ABK28666 unknown [Arabidopsis thaliana]	257	3e-020

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q9SIJ0 Putative C2H2-type zinc finger protein	322	7e-028
A0MFC0 Putative uncharacterized protein (Fragment)	257	2e-020
O65499 Putative uncharacterized protein At4g35280	257	2e-020
B9HPY6 Predicted protein	255	4e-020
B9MYZ1 Predicted protein	246	4e-019

Arabidopsis top hits (Blast detail)	Score	e value
AT2G17180.1 zinc finger (C2H2 type) family protein	322	4e-030
AT4G35280.1 zinc finger (C2H2 type) family protein	257	1e-022
AT3G19580.1 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding	145	1e-009
AT3G19580.2 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding	145	1e-009
AT1G27730.1 STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding	142	3e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	6			40%


9	1			7%


6	4			27%


7	2			13%


11	2			13%

Unigene Members	Member information