 |
Information for unigene UN21765
| FASTA Sequence |
| Unigene ID: UN21765 | Length: 1916 |
SSR | | GGAAAAACCCTAAGGATATATGTACGTCGCTCTGAGCATCTGGTAGAGCGTATCCTTCCTATCTGTCTTCCTTTCTCATTTCTTGA
TTCCATTCGGAAAGCTCCAAACTTAATCTACCGTACCGGATTATAGAGAAAGAATGGAAGCTTGTTGTGGAGGTACTACAATGGGG
TCTCTTCAAAACCTGGAGGGGTTAAAGGACCTGTCTTTGCTCCAGTGACCAAGTTTTCTCAGCAACTGAATTTCAATTTCCCGAGA
CCTGTCCGTTCTCTGTCTCTGAAAAGAAGCCTGGTCGCTGAAAGGAGAGCGTCTCCTGTCTCGGTACCTGCCGTCGAGAGTAGCAG
CGATGCAATCCCTTTTGAGGACTATGGTCGTTCTGAAGTGGATCCAGAGGTCGATGAGATTATTAAAAAGGAGAAAAACAGACAGT
TCAGGAGCTTGGAGCTTATTGCTTCCGAGAATTTCACGTCTCGTGCTGTTATGGAGACTGTTGGATCATGCCTTACCAACAAGTAT
TCTGAGGGACTTCCTGGTAAAAGGTATTATGGTGGTAATGAGTTCATCGATCAGTTGTAGACACTTTGCCAGAACCGGGCTTTAGC
TACCTTCCGGTTAGATTCTACCAAATGGGGGGTTAACGTTCAGCCGTTATCTGGTTCACCTGCAAACTTTGCTGTGTACACTGCCA
TACTTAAGCCTCATGATAGAATCATGGGTTTGGATTTACCTCATGGCGGCCATCTGTCTCATGGGTTCATGACTGCCAAAAGGCGT
GTATCTGGAACTTCAATATACTTTGAGTCCATGCCTTATCGACTTGATGAATCAACAGGCATTGTGGACTATGATATGCTCGAGAA
AACTGCTGCACTGTTCCGACCAAAGCTTATAATTGCTGGAGCTAGTGCATACAGCCGAGATTTTGACTATCCTCGCATGAGGAAGA
TCGCAGATTCAGTTGGTGCTTTTCTGATGATGGATATGGCTCATATCAGTGGACTTGTGGCTGCCTCTGTGGTAGCTGATCCTTTT
GAGTATTGTGATATCGTCACAACAACCACTCACAAGTCTTTGAGAGGTCCGAGAGGTGGCATGATCTTCTTCAAGAAGGATCCAGT
TAATGGGGTTGAACTTGAATCTGCCATTAACAATGCTGTCTTCCCTGGTCTGCAGGGTGGCCCTCATAACCACACAATTGGTGGAT
TAGCAGTCTGCTTGAAACATGCACAGTCGCCGGAGTTCAAAGCTTACCAGAAAAGAGTTGTGGCTAACTGTAGGGCTCTAGCTAAC
CGATTGGTTGAACTTGGGTTTGATCTGGTGTCTGGTGGCAGCGACAATCATCTGGTCCTTGTCGATCTTAGACCATTGGGCATGGA
TGGTGCTCGGGTAGAGAAAATCTTAGACATGGCATCGATTACACTCAACAAGAACTCTGTCCCTGGGGATAAGAGTGCGTTGGTTC
CAGGGGGAATAAGGATAGGAACGCCTGCGATGACGACAAGAGGACTGACAGAGAAAGACTTTGTGGTGGTTGCTGACTTGATCAAG
GAAGGAGTTGAGATAACAATGGAAGCGAAGAAGCTGGTCTCGGGATCAAAGCTTGGAGAGTTCACCAAGCTGGTGACATCTCCTGA
TTTCGCGTTGAAAGAGAAAGTGGAGAGTCTCAAGGAGAGAGTCGAGTCCTTCACCTCTCGTTTCCCCATTCCTGGAGTTTGATTGA
AGTTATTCAAAAGTTCAAAACAGATGGTGGTGTCTTGTTGTATCTTTTCTTAAAAAAAATATTTGAGGGTTTGATCAGGTTGCCTG
TGACCCAAGGCAATAAAAATAACGGTGTCAAAAAAATTATTAAAATAATGTTTAAATAAGAGAACAAGCTATTTCGCGGGAGGTGG
CTAATGTATCTCTCTCTCTCTCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567895 serine hydroxymethyltransferase 3 [Arabidopsis thaliana] | 2332 | 2e-260 |
| AAK53034 AT4g32520/F8B4_220 [Arabidopsis thaliana] | 2326 | 1e-259 |
| XP_002867239 hypothetical protein ARALYDRAFT_491471 [Arabidopsis lyrata subsp. lyrata] | 2288 | 3e-255 |
| CAA22579 glycine hydroxymethyltransferase (EC 2.1.2.1)-like protein [Arabidopsis thaliana] | 2179 | 1e-242 |
| ABO61383 plastid serine hydroxymethyltransferase [Populus tremuloides] | 2114 | 4e-235 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54Z26 Serine hydroxymethyltransferase 1 | 1326 | 4e-145 |
| P34899 Serine hydroxymethyltransferase, mitochondrial | 937 | 6e-100 |
| P50433 Serine hydroxymethyltransferase, mitochondrial | 936 | 7e-100 |
| Q9SZJ5 Serine hydroxymethyltransferase, mitochondrial | 932 | 2e-099 |
| P49357 Serine hydroxymethyltransferase 1, mitochondrial | 926 | 1e-098 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94JQ3 Serine hydroxymethyltransferase | 2326 | 8e-260 |
| Q9SUU0 Serine hydroxymethyltransferase | 2179 | 9e-243 |
| A9PL11 Serine hydroxymethyltransferase | 2114 | 3e-235 |
| B9HDQ7 Serine hydroxymethyltransferase | 2110 | 9e-235 |
| B9S1D7 Serine hydroxymethyltransferase | 2075 | 1e-230 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G32520.1 SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 2333 | 6e-263 |
| AT4G32520.2 SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 2333 | 6e-263 |
| AT4G37930.1 SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding | 932 | 2e-100 |
| AT5G26780.1 SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 920 | 5e-099 |
| AT5G26780.3 SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 920 | 5e-099 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
