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Information for unigene UN21769
| FASTA Sequence |
| Unigene ID: UN21769 | Length: 1249 |
SSR | SNP | GGACGCTTTTCTCAATCTCTCTGTCGGAGAGAGAGAGAGAGACTCGATACTCACCGTCAAAAGGAAGAGACTTTCGTGGTGGGTTT
CCCGAGACTTGGAGAAAGAGATGAGTTTTCGAGATTTAGAGGCGGGAAGAGGAAGATCATTAGCTTCGTCAAGGAACATCAATGGA
GGAGGAGTTCGACAAGACACGACGCAAGCCGTAGCTTCTGGTATTTTTCAGATCAACACAAGCGTCTCTAGCTTCCAACGACTCGT
CAACACTCTCGGTACTCCCAAAGACACCCCCGAGCTCCGAGATAAGCTGCACAAGGCAAGACTATATATCGGACAGTTAGTGAAAG
ACACAGCAGCTAAACTTAGAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTTAATCAAAAGAAGAAGATTGTGGATGCTAAGCTT
GCAAAAGACTTTCAATCTGTATTGAAAGAGTTTCAAAAGGCTCAGCGTCTCGCTGCTGAAAGAGAAACCGTGTATGCTCCTCTTGT
GACCCTACCATCTCCTCCTTCTAGCTATACAGCCAGTGAGATAGGTGTGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTTCTTG
TTGAATCAAATAGACAAGAACTTGTACTGTTGGACAATGAGATTGCGTTTAATGAGGCTGTTATTGAAGAAAGAGAGCAAGGGATA
GAAGAAATCCAGCAACAAATTGGCGAGGTGCATGAAATCTTCAAAGACTTGGCAGTGTTGGTACATGATCAAGGAACCATGATTGA
TGATATCAGTACTCACATTGATAACTCCCACGCTGCAACTGCACAAGGAAAATCCCATCTCGCAAAAGCCTCAAAGACGCAAAGAT
CGAACTCTTCCCTGACGTGCTTGCTCTTGGTGATTTTTGGTATCGTGCTCCTGATTGTCATCATAGTGCTCGCGGTTTGAGTGCTG
CATCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTTTCTCCTCATGGCTCTATCCGTTGCTACCATTTAGTCTGTT
GGTCCTTTTGTCTCTTGTTATTGAGTATATAGAATAGTTCCCTTTGGTTGGTTTGGTCTGTGGGTATTGGGTTTTGTAAGAAAGTG
TGTTACTCAGCGTTGTCTATGTAAGACAATTCTTCTGTTGAAGACCAGAGTGATTGATAAAAGTGAAATCTTCTATTTGTGTTTTT
TTCTTAAAAATGGAATTCTTAGTGGTCATGAAGCTAAGTGAATCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| D71447 probable syntaxin - Arabidopsis thaliana | 1214 | 6e-131 |
| ABD65611 syntaxin, putative [Brassica oleracea] | 1183 | 2e-127 |
| ABD65159 syntaxin, putative [Brassica oleracea] | 1158 | 2e-124 |
| XP_002870088 hypothetical protein ARALYDRAFT_493104 [Arabidopsis lyrata subsp. lyrata] | 1110 | 7e-119 |
| NP_001078403 syntaxin-23 [Arabidopsis thaliana] | 1106 | 2e-118 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q25BM0 Syntaxin, putative | 1183 | 2e-127 |
| Q2A976 Syntaxin, putative | 1158 | 1e-124 |
| A8MS65 AT4G17730 protein | 1106 | 1e-118 |
| B9MU58 Predicted protein | 1041 | 5e-111 |
| B9SNS6 Syntaxin, plant, putative | 1012 | 1e-107 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G17730.2 SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor | 1106 | 7e-121 |
| AT4G17730.1 SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor | 1102 | 2e-120 |
| AT5G46860.1 VAM3; SNAP receptor | 1039 | 4e-113 |
| AT5G16830.1 SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor | 821 | 8e-088 |
| AT1G32270.1 ATSYP24; SNAP receptor/ protein binding | 581 | 6e-060 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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