 |
Information for unigene UN21840
| FASTA Sequence |
| Unigene ID: UN21840 | Length: 1430 |
| SNP | AAATTAATCTTTTTAGTTTTATTAAATCATAATGCACTCACACATCTATATGTGTTGGCATCGGATAGAAACATTTTTTTGTTACA
GCTTTGTAAAAGTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAATTGGATGTGAAAGCCCTAGTGTGTTG
ATCTGAGCTTCAACACTTTACGCTTGCCCAGGTGCCTTGACGACAGGTCCAACGCAAGCCTTTGGGTTCTGGGTTCCCACAAGCTT
AGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATCAGGTCCTTTGTACTCAATGTTAATGTCTCCAATCTCAACATTCTCAC
ATGGATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTTCCTCTAATCTTCCTGAAGGTAATGTCCACCAGC
TTAATTGTTGATGGTTTGTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTGGGTTGCTAACTTTGTCAAG
GATGATATCCTCAAAATGAATACCGGCAGCGGTTGTGGCGCAAGCCGCAGAGGGCCATGTCTTGATCCTCAGACCGTTATCGGTTC
CCAGGAGGGTGCAGTTCATAACCTTAATGTCATTTACATCTTGCTCCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGT
CCTGGACCGCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGATGCAGTCATCTCCTGTGGCGATCTTAGT
GTTGAGGATCTTGACTCCCTCACATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAATGATCTTGATGTTAT
CAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGTGGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTTGTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTC
ACCGTCAAATGTTCCACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTATCCTTTCCCTGGGTAGAGCCAC
CGTCAGCTTTGACGTTGCCTTGCAAGGTGAACTCGATTGGAGATTTGCATGGACCAGTCATAGCGATCTCACCAAGCTTGAAGTCA
CCTTTTGGGATCAGCACCTGGCTTGGTGCCGGAGCTTGGCATGCCGATGTGAATGCTTTAAGAACTGCCGCGGTAATATCAGAATT
TGGAGGACCACCAGCGTTAAACACCTCGGCATTGGCTGAATATCCTAGCAAACATAGAACCAAAATTGTATATATTCCTAAATATG
AACCCATTTTTATTTATTTATTTATTTTATTTTTTATTGTTTTTTTTTATTGTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAP42648 polygalacturonase [Brassica napus] | 2065 | 1e-229 |
| AAM74219 putative pollen polygalacturonase [Brassica oleracea] | 2057 | 1e-228 |
| P35337 RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor | 2038 | 2e-226 |
| NP_187441 polygalacturonase-like protein [Arabidopsis thaliana] | 1715 | 6e-189 |
| XP_002884669 hypothetical protein ARALYDRAFT_478121 [Arabidopsis lyrata subsp. lyrata] | 1644 | 1e-180 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P35337 Polygalacturonase | 2038 | 8e-228 |
| Q39766 Polygalacturonase | 1009 | 2e-108 |
| Q39786 Polygalacturonase | 1000 | 2e-107 |
| Q6H9K0 Exopolygalacturonase (Fragment) | 969 | 8e-104 |
| P24548 Exopolygalacturonase (Fragment) | 964 | 3e-103 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q7Y1T6 Polygalacturonase | 2065 | 1e-229 |
| Q8LK84 Putative pollen polygalacturonase | 2057 | 8e-229 |
| Q9SFD0 Putative polygalacturonase | 1715 | 4e-189 |
| B3EZF0 Polygalacturonase | 1641 | 1e-180 |
| A1ECA6 Pollen-specific protein MF9l | 1634 | 9e-180 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07840.1 polygalacturonase, putative / pectinase, putative | 1715 | 2e-191 |
| AT3G07820.1 polygalacturonase 3 (PGA3) / pectinase | 1632 | 9e-182 |
| AT3G07830.1 polygalacturonase, putative / pectinase, putative | 1619 | 3e-180 |
| AT5G48140.1 polygalacturonase, putative / pectinase, putative | 1575 | 4e-175 |
| AT3G07850.1 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase | 924 | 1e-099 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
