RadishBase

| | | |

Information for unigene UN21873

FASTA Sequence

Unigene ID: UN21873	Length: 921	SSR
GGGTCAGACCTAAGCGAGAAAACCCTTGAAAAAAAAATATTTCTCCGTTTAAAAACCCCATCTCTCCCTCTAGCCGTTTTCATTCT GTAACGAACGCTTAACACATCGCCCCTGATTCCGTAAACATGGCTCTACCAAACCAGCAAACCGTAGATTATCCTAGCTTCAAGCT CGTCATTGTTGGTGATGGCGGCACAGGGAAGACAACCTTTGTCAAGAGACATCTCACTGGAGAGTTTGAGAAGAAATATGAACCTA CTATTGGTGTGGAGGTTCATCCTCTAGATTTCTTCACAAACTGTGGCAAGATCCGTTTCTACTGCTGGGATACTGCTGGTCAAGAG AAGTTCGGTGGCCTTAGAGACGGTTACTACATCCATGGTCAGTGTGCAGTAATCATGTTCGATGTAACAGCGCGGCTCACATACAA GAACGTGCCCACGTGGCACAGAGATCTCTGCCGTGTGTGTGAGAACATCCCGATTGTTTTATGCTGGAACAAAGTCGATGTGAAGA ACAGGCAAGTCAAGGCGAAGCAGGTGACGTTTCACAGGAAGAAGAATCTTCAGTACTACGAGATATCTGCCAAGAGCAATTACAAC TTTGAGAAGCCCTTCTTGTACCTCGCTAGGAAGCTTGCCGGAGACCCTAACCTTCACTTTGTCGAGTCGCCCGCTCTTGCTCCCCC TGAGGTTCACATTGACGTTGCTGAGCAGCAGAGGAACGAGGCTGATCTTATTGCAGCCGCGGCTCAGCCTCTCCCTGATGATGATG ATGACGCTTTTGAGTAAAAATACAAAAATTCTAAAAATATGGATGCAGTTTGCGTTTCAATGATTCTCTCTGTTCTTCTTTATGTT GTGTTGATGTCACTACATTTATATATGAATGATGAATCGAGAGTCTTTTAGAACTAAATTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABD17866 etiolation seedling like-RAN2 small Ras GTP-binding nuclear protein [Brassica napus]	1182	2e-127
CBI21000 unnamed protein product [Vitis vinifera]	1180	3e-127
NP_197502 GTP-binding nuclear protein Ran-2 [Arabidopsis thaliana]	1162	4e-125
CBI28152 unnamed protein product [Vitis vinifera]	1158	1e-124
XP_002284967 PREDICTED: hypothetical protein [Vitis vinifera]	1158	1e-124

Swiss-Prot top hits (Blast detail)	Score	e value
P41917 GTP-binding nuclear protein Ran-2	1162	2e-126
P41916 GTP-binding nuclear protein Ran-1	1154	1e-125
Q8H156 GTP-binding nuclear protein Ran-3	1138	1e-123
P38548 GTP-binding nuclear protein Ran/TC4	1133	4e-123
P41918 GTP-binding nuclear protein Ran-A1	1128	2e-122

TrEMBL top hits (Blast detail)	Score	e value
A9X4K1 Etiolation seedling like-RAN2 small Ras GTP-binding nuclear protein	1182	1e-127
Q8S2Z7 GTP-binding protein	1150	7e-124
A9X4J9 Putative RAN2 small Ras GTP-binding nuclear protein	1146	2e-123
A9X4K0 Putative RAN2 small Ras GTP-binding nuclear protein	1141	7e-123
A2ICP9 Ran1	1140	9e-123

Arabidopsis top hits (Blast detail)	Score	e value
AT5G20020.1 RAN2; GTP binding / GTPase/ protein binding	1163	1e-127
AT5G20010.1 RAN-1; GTP binding / GTPase/ protein binding	1155	1e-126
AT5G55190.1 RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding	1139	7e-125
AT5G55080.1 AtRAN4 (Ras-related nuclear protein 4); GTP binding / GTPase/ protein binding	781	2e-083
AT5G39620.1 AtRABG1 (Arabidopsis Rab GTPase homolog G1); GTP binding	242	7e-021

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	3			50%


7	2			33%


6	1			17%

Unigene Members	Member information