Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN21874

FASTA Sequence
Unigene ID: UN21874Length: 1368  SNP
GGACCGCCGTTCGTTCGTTCCTCCCTCGCCGCCACCTTCTCCTCTCTCTAGCTCTCAAAGTCGCAACACCCTACTGAATTGCTCGC
AAAGGAAGCATGGTGACTCAAGAAGACAAGATATTCGCCAAGAACTTCTGCATCGACGACCTCCCCGACGTCCCTGCCGGACTTCC
TCCGCATCTGAAACTCAAGCAAAACCGTGTCGTCTCTAAAAAAGATACTTCCGTTGTTGATACTTCAGATGTCATTTACTCGGGTA
GCTATGTCTCTTCGGGAGTGGACAACACTGTGAAGTTAGGAAACTTCTATGAGGATTTCAAAGTTGATGTGATTAGTTGCACAGAG
ACAGACATGGAGTTTGATATGATCGGTATCGATGCTGCATTCGCCAATGCTTTCAGAAGGATCCTTATAGCTGAGGTTCCTTCAAT
GGCTATTGAAAAAGTGCTTATAGCATACAACACGTCGCTTATTGTTGACGAAGTTCTTGCTCACAGGATTGGTCTTATTCCCATTG
CCGCAGATCCAAGGCTCTTTGAGTATTTAACCGAAAACGACCAGCCAAACGAGAAGAATACCATCGTTTTCAAACTCCATGTGAAA
TGTCCGAAAGGTCAATCACGTCTTCATGTTTTAACGAACGAGCTGCAATGGTTACCAAATGGAAGTGAGTTTCTCAAAGAATCAGG
AGATTCAACTTCAACCTCAAAGCCAAGAACTTACACTTCATTCAGCTGTAGCCAAGATTCTCTCCCTGAGTTTGCTGATAACCCTA
TCACTCCGAGCCACCTTGATATCTTGATATCAAAACTCAGCCCTGGTCAGGAAATTGAACTTGAAGCTCATGCGGTTAAGGGCATT
GGTAAAACACATGCAAAATGGTCTCCAGTAGGGACAGCTTGGTATCGAATGCTTCCTGAGGTGGTTCTACTAGGGGAAGTTGAGGA
TGAGAAAGCTGAACGACTCGTAAAAACCTGCCCAATGAATGTTTTTGACATTGAAGACATGGGCAATGGTAGGAAAAGGGCAACGG
TAGCACAGCCTCGCAACTGCACACTATGTAAGGAGTGCATAAGAGACCATGACTTGGTTGACCTGGTGGATCTGCGTAGTGTCAAG
AACCATTTTATATTTAAAATTGAGTCCACAGGATCACTGCCTCCGGATGTTCTCTTTACTGAAGCTGTGAAGATATTGGAAGATAA
ATGTGAGCGTGTTATTGCTGATCTCTCCTGAAAAGAGATTGTTTTGGTTTACCTCTCTACTACCTACACTTTCCGGTTTAGTTCAA
TTTTGGTGTTTGTATCAAATATTCTCCTTATTATTAATACGAAGAACCTTGAAATTAATTTTATAGTTTTCGTTTGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002886582 ATRPAC42 [Arabidopsis lyrata subsp. lyrata]15759e-173
NP_176282 DNA-directed RNA polymerase subunit [Arabidopsis thaliana]15426e-169
AAB00528 RNA polymerase subunit [Arabidopsis thaliana]15372e-168
AAM64255 RNA polymerase subunit [Arabidopsis thaliana]15283e-167
XP_002888129 ATRPAC43 [Arabidopsis lyrata subsp. lyrata]14323e-156

Swiss-Prot top hits (Blast detail)Scoree value
O94616 DNA-directed RNA polymerases I and III subunit RPAC13836e-036
Q32L22 DNA-directed RNA polymerases I and III subunit RPAC13811e-035
O15160 DNA-directed RNA polymerases I and III subunit RPAC13764e-035
P52432 DNA-directed RNA polymerases I and III subunit RPAC13658e-034
Q54SN4 DNA-directed RNA polymerases I and III subunit rpac13523e-032

TrEMBL top hits (Blast detail)Scoree value
Q9C6C2 RNA polymerase subunit15424e-169
Q39215 RNA polymerase subunit15372e-168
Q8LD68 RNA polymerase subunit15282e-167
Q39216 RNA polymerase subunit14295e-156
B9S9W7 DNA-directed RNA polymerase I/III subunits, putative12835e-139

Arabidopsis top hits (Blast detail)Scoree value
AT1G60850.2 ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization15422e-171
AT1G60850.1 ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization15422e-171
AT1G60620.1 ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization14302e-158
AT1G60850.3 ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization11211e-122
AT2G15400.1 NRPE3B; DNA binding / DNA-directed RNA polymerase/ protein dimerization3371e-031

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
125  38%
 
102  15%
 
114  31%
 
82  15%

Unigene MembersMember information