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Information for unigene UN21915
| FASTA Sequence |
| Unigene ID: UN21915 | Length: 1157 |
| SNP | GGAAGAGATTGAAACTGAAGATGTGGAGCGTACACGAGATGTTTACAGAGAATGCCTCAAGCTCATCCCCCACTCCAAATTTTCCT
TTGCCAAAATATGGTTTCTTGCTGCACAGTTTGAAATCCGGCAATTGAATCTGGCCGGTGCTCGGCAGATATTAGGAAACGCTATT
GGAAAAGCTCCAAAAGATAAGATTTTCAAGAAATACATCGAGATTGAACTCCAGCTGGGAAACATGGATAGGTGTAGAAAGCTTTA
TGAACGGTACCTTGAGTGGTCTCCTGAGAATTGCTATGCTTGGAGCAAGTATGCTGAGCTGGAGAGGTCTCTTGCTGAGACTGAAC
GAGCTAGAGCTATCTTTGAGCTAGCGATATCTCAGCCAGCTCTTGACATGCCCGAGCTGCTATGGAAGGCATACATAGATTTTGAG
ATAGCAGAAGGAGAATTAGAGAGGACACGAGCTTTATATGAGCGACTATTGGACCGCACAAAGCATTACAAGGTGTGGGTTAGTTT
TGCAAAGTTTGAAGCTTCTGCTGCAGAACAAGAAGAAGACGAGGAAGAGGAAGAGGAAGAGCAAGAACAAACAGCTGCTACTGAAG
GCAAGAAAGAGTGCATCAGACGCGCCAGAGCGATTTTCGAGAGAGCCAACAGCTACTTCAAAGATTCTGCACCAGAGCTGAAAGAA
GAAAGAGCTACACTCTTGGAGGATTGGCTTAACATGGAGACAAACTTTGGTAATCTCGGGGACGTGAGTGTCGTACAATCTAAGCT
CCCGAAGAAGCTCAAGAAGAGAAAGCCGATCACAAGAGAAGATGGCTCTACAGAGTATGAAGAGTACATTGACTATCTATATCCAG
AAGAATCACAGACAACGAATCTCAAGATTCTTGAAGCAGCTTACAAATGGAAGAAGCAGAAGCTTGCTACTTCTGAGGAGGATTAC
GATTAACTAAAGTTGCTTCTTAGTTATATCAAAACTGTGACTTGTTGTTTTGTATTCTTTCTTAGTTCTATGTACATCGCCACTCA
TCTTTATGGTTCAGCAGTAATCTTTTATTGTGTTAGCAAAAAAAAAAACATTATGTTACTGTTTTTGTTCTTTTTTGGTATTAGAC
CTTTTGGTTTGCGTGAATCCGGTTTAGAAAATATGGGAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_198992 putative crooked neck protein / cell cycle protein [Arabidopsis thaliana] | 1481 | 6e-162 |
| AAN72051 cell cycle control crn (crooked neck) protein-like [Arabidopsis thaliana] | 1481 | 6e-162 |
| XP_002870617 hypothetical protein ARALYDRAFT_916024 [Arabidopsis lyrata subsp. lyrata] | 1481 | 6e-162 |
| XP_002863433 hypothetical protein ARALYDRAFT_330810 [Arabidopsis lyrata subsp. lyrata] | 1366 | 1e-148 |
| XP_002882809 hypothetical protein ARALYDRAFT_897540 [Arabidopsis lyrata subsp. lyrata] | 1360 | 6e-148 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5K654 Pre-mRNA-splicing factor CLF1 | 864 | 9e-092 |
| Q4WT84 Pre-mRNA-splicing factor clf1 | 854 | 1e-090 |
| Q7SGD2 Pre-mRNA-splicing factor clf-1 | 804 | 8e-085 |
| Q54XP4 Crooked neck-like protein 1 | 748 | 2e-078 |
| Q5BDX1 Pre-mRNA-splicing factor clf1 | 672 | 2e-069 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GTX9 Cell cycle control crn (Crooked neck) protein-like | 1481 | 4e-162 |
| Q9LK51 Probable cell cycle control protein; crooked neck-like protein | 1296 | 1e-140 |
| A5BWC0 Putative uncharacterized protein | 1291 | 4e-140 |
| Q9FJ37 Cell cycle control crn (Crooked neck) protein-like | 1274 | 4e-138 |
| C5WPP1 Putative uncharacterized protein Sb01g012080 | 1127 | 4e-121 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G41770.1 crooked neck protein, putative / cell cycle protein, putative | 1489 | 3e-165 |
| AT3G13210.1 crooked neck protein, putative / cell cycle protein, putative | 1301 | 2e-143 |
| AT5G45990.1 crooked neck protein, putative / cell cycle protein, putative | 847 | 7e-091 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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