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Information for unigene UN21938

FASTA Sequence
Unigene ID: UN21938Length: 1853  SNP
CTTTGACTCAGCACTACGGTGCAATTCAAGGATTAGCGGCCTTGGGGCACAATGTCGTACGCTTCTTGTCTGCCAAATCTTGAACC
GTATCTGAGTCTTCTCGAACCAGAATTGGATGCTGAGAAGCAAAAGAACCAGATGAAGAGCTACGAAGCTTGGCGTGTGTATGGAG
CTTTACTGCGTGCTTCAGGCCTGTGTATACATGACCGGCTTAAAATCTTCCCATATTTACCATCTCCTTCACCAAGCTTTCTCAAT
AAGGGAAAGGGGAAAATAATCAATACTGAGCCAAATAAGCGAAAGCTGAGTGTAGATTCTTCATCCACTATGCAAGTAGATAAACC
AATGGGAGATGACAATCCTCCACAAAACTCTGTTCAACCATCCTCATCAGGACAAGCTTCTGATGGTGCACCTGAAAGCAGAAACG
CAAAGGAGAAAGAAGGCAGCAAGGGCCGGGCTATCACCATGAAAGCAATCCTTGATCAGGTCTGGAAAAATGACCTCGATTCTGGA
AGGCTCTTGGTGAAACTGCACCAACTCTATGGTGATAGGATCCTTCCTTTCATCCCTTCTACAGAGATGTCATTATTCCTCTAAAC
CGTTAAGAGCGATAATGTCATCCATAAACTCCCTGAGCATCTCGGGCTTAGGAGAAGAAGCCTACCTGTTGTGCTTTGACGGCTTC
TTACAATATATAAACTGAACAAGTCTGATTAACACTATTTGTTTGGTTTCATAGCAATTCCATGTTTGTTCAAAAGTTGAGACTTT
GACGATTGAGTTAATGTAACGGTAAAATGTTTGAAACATAACTGTCATTTAACAAGACACATAGTTGTTGCAGATACAAAGGTCTA
ACAAACAGATTATTAAAACGAAGAGCGACAACGATCTAAAATGCAACAATATCTTCGTATTAGTCGTACGGAATCTGGATATACGC
AGCATCACAGACAAATGGGATGTCCGCGTACATACCCGCAAGTGCACACCTTATGCTCTCAAGGACGGTAAACAGATATGCAAACG
CAACAGCAGTCCAGAAATGCATCCCAAACTTACCCCAATAGAGTCCAAGAGGCATCCACTTGCTGACAGTTCCCACCACCTGAAGA
GCGATTTCAAGCAGCATACCCATCACCACATGGAACCTGAAGAAGTGAGGCCATTCTTTTCTTCTCACTACCCCAAGGTAAGCTAC
AAAGAAGTAAGCCATGAGGAACCAGCCCGGTAACTTCCCTAAGGCGCTTAGAAACGGGTAGGTCAAGAACTCGAAATCTTCTAGGA
AAGGGTGGAGATGGTAAGCGGTTTCTGCGTACATCCAGGTTTCGTGCAGCGGCATCAGGTAAGGTAGGCATGCCAAAGTTCTCCAC
CACCATTGTGGCTTTTTGGTCATTGGAGGAAACCGGAAGCTGGAAGGTACATCTTTTGATGCTCTTGGGGACAAAAGGGTTTTCCT
GCGGACGGGTAACACAGGTAACGCACCAAACAGACTACCTTGTTCCCCACTCAGAAGGCGAGAAGACGAGGCTGAGAGATATGACA
AAGGCACACCTCTTTGTACACTAGCTTGAAGCCCATTAAATGGTAAAGAGTTCTTTATGACAGACAATGAACTTGAAGCAAGACAA
CGTTGAGACTGTCCTGATGTTGTTGTAGCTCTGTATGAAGATGGCTTGAACCCCCAAGAGCTTGTTAGAGCATGTGAAGTCACCGT
GCTGCATCCACTTATCATCATTACCAACCTAAACTACCTTCGCTGGAGTGTAGAGAGACGAATAAGGGTTTTATCCTGCATTCATC
TATAGTTAATCCTCTGGAATGCTATCTCATCTCCTTCTCTTCTCCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889528 hypothetical protein ARALYDRAFT_887669 [Arabidopsis lyrata subsp. lyrata]12452e-134
NP_171986 translocon at the inner envelope membrane of chloroplasts 20 [Arabidopsis thaliana]12264e-132
NP_001184910 HIT-type Zinc finger family protein [Arabidopsis thaliana]11144e-119
XP_002510436 conserved hypothetical protein [Ricinus communis]10177e-108
XP_002281211 PREDICTED: hypothetical protein [Vitis vinifera]9981e-105

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8GZ79 Putative uncharacterized protein At1g04940/F13M7_512263e-132
B9R7Z3 Putative uncharacterized protein10175e-108
Q2V9A0 Tic20-like protein9906e-105
A9PGP8 Predicted protein9791e-103
A9PAD4 Predicted protein9711e-102

Arabidopsis top hits (Blast detail)Scoree value
AT1G04940.1 TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)12271e-134
AT4G03320.1 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)4322e-042
AT1G04950.1 TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor3783e-036
AT1G04950.2 TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor3783e-036
AT1G04950.3 TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor3783e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
105  20%
 
129  36%
 
95  20%
 
115  20%
 
61  4%

Unigene MembersMember information