RadishBase

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Information for unigene UN21965

FASTA Sequence

Unigene ID: UN21965	Length: 1199	SSR
GGACCCAAAGCTCTGTTCGCAGCAAATCGCTCGAAAACCCTAAAACAGCCAGCAGTCGCCAGCCATGGCCAAGTCTAAGAAAGAAT CCATTACCAAAGTCGAAGCAGCAGCAGTACTTGACTCAAAGACGAAGCCATCGAAGAAGAGTAAGAGAGATGCGGAAGTTGATTCG GACATCCCAAAGGATCCCAAGAAGCAGAAGAAAGAGTTGATTCAAGCTGTTGAAAAGGCACCACCACCAAAGAAAAAGGAGAAGAA GAAGAAGAACAAGAAGAATACTAATAGTGAAATGGTGGAGTCAGACCAGAAATCAGTTGCAAAAGAACCCAAGACGCTATTTGTTG GACATCTTCCCTTTCAGTTTGAGAAATCTGACTTAAAGAACTTCTTCAAAGAAGTTGGTGAAATCGTCGATGTTAGACTTGCTAAG GGATTCGCACATGTAGAGTTTGCTTCTGAAGAAGCTGCTCACAAGGCATTGGAACTGAATGGTAAACCATTACTAGGCCGCAATAT TCTGCTTGATTTTGCTAAGGCGAGACCTACTTCACGTCCAGGAAACAAAGTTAAAACGATTTTTGTTACGGGATTCAACAAGTCTG TTAGTGAAGATGATATGAAAACTTCCTTGAGGAAGTCATTTTGGTGCTTGTGGAGAGATCAAAAGGATTTTTTTTCCTTATTACCA AGAGACTGGTGATAGCAAGGGGGTGGCTTACCTAGATTTTAGTGAGGATGGGTTCATCAAGGCATTGGAACTAAACGGAAGTGCAC TAGGAGGACGGAACATTGTGGTGATTGAAGCTAGACCAAAAGAAAAGAATGCTGATGGGAATAGTGGCCGTGGCAGCAATGATGAC ACCTTTAAGAGAGGACCTGAACGTGGCGACCGTGACAGCCTCAAAAGAGGACCTGGAAGAGGCAATGGTGACCGTACAACACCCAG CAAAGATAGCGTTATTGCCTCAGCAGCTCATGGGAAGAAGATCGTCTTTGATGAGTAGTGAAAGACCTTGGCTCTTCTTTTGTTCT ATCTTTCAGTCCCTTTTTTTGCCTAGTCTATGAGAAAAAACACAAAGCTTATATGATGAGTTGGTTACTCTTGGATTTGTAGTATT GTTTTTCTATTAACAAGGTTTTGCGTATGTGACATTTTTACTAGTAGAAACTTTGAATGAATTCCTTGAATTCCTGGCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002307174 predicted protein [Populus trichocarpa]	317	6e-027
BAB02219 unnamed protein product [Arabidopsis thaliana]	314	1e-026
NP_188491 nucleolin [Arabidopsis thaliana]	314	1e-026
XP_002277195 PREDICTED: hypothetical protein [Vitis vinifera]	311	3e-026
CBI27136 unnamed protein product [Vitis vinifera]	305	1e-025

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LD90 H/ACA ribonucleoprotein complex subunit 4	127	3e-006
A5E4P1 Protein PXR1	123	8e-006
A6ZPE5 Nucleolar protein 58	122	1e-005

TrEMBL top hits (Blast detail)	Score	e value
B9H5S7 Predicted protein	317	4e-027
Q1PEP5 Nucleolin	314	9e-027
Q9LIH8 Similarity to nucleolin	314	9e-027
Q8LNZ4 Tobacco nucleolin	295	1e-024
Q01JU3 H0714H04.9 protein	276	2e-022

Arabidopsis top hits (Blast detail)	Score	e value
AT3G18610.1 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding	314	5e-029
AT1G48920.1 ATNUC-L1; nucleic acid binding / nucleotide binding	183	7e-014
AT1G45100.1 polyadenylate-binding protein, putative / PABP, putative	146	1e-009
AT5G41690.1 RNA binding / nucleic acid binding / nucleotide binding	133	5e-008
AT3G57150.1 NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase	127	2e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			50%


9	2			50%

Unigene Members	Member information