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Information for unigene UN21975
| FASTA Sequence |
| Unigene ID: UN21975 | Length: 1044 |
| SNP | AAAATGTTACTCTGATTAAGACCAAGGAAATTTAAAAAAAAAAAGAGTACAGAGAGCTCTGCCGTAAACTAAAAACATGGTGGAAC
TGAGACAAGCAAAAGTACAAAAAATTCTCATGACACTCCCAAGATCCTGTTCTGGATATTACAATTCCAAATCTGTAGCACAAGAG
TCATATTTGTCTTACAGGATTTTTATTCACTGAGCTAGCTTCTGTCTCTTTATCCTCTCTAGCGCACCCAGAGCCTTGCCTGCACC
GTCTTCCTCAGCTTCTTTGCCGTCTTCCTCTCTCTTTCTGGCAAGTCCTCCAAACACAGCAGCAGGGACTTCTTTCTGAGCAATCT
CTACATTGTCTTCTCCATCAGACTCCTCTTCATCACTCTCATCTGGAAGCTCGATATCTTCCCCATTCCCTGTCACAGGTTTCCCT
GCATTCTCACCCGACTGTGCGATGACTCCTGCGCTCACAAACCCAACTCTCCTTCCACCATCTTTTGATGTAACCGTGGTAGACAT
TGGAGCCATCAGCTGCCTCTCCAGAGCCGCCATTTCATCAAAACCCGCTTTCTTCAGCTCGTCTTTCGCCTCCTCCACATCTATCT
TGTCCTTTAGCATCATGTTCTCTGGCAGAATGAAATGAGTCTGACTGTAACTAGCGGAGACACTTCTCTTGATCCTAAGCATCTCT
CTATACGTGTCTTCATTCCCATGCAGACACCTCAAACTCGTGCCAGTTGTTCCAGAAGTCCGGGTCCGATCTTGGATCAGCATACT
GAGAGGCGTACTTGTAGACCGCACGAGAACGGTCAATCTCTCCCAGACTCCTCTCCAGCTCTGCAAATTTAATGCACATGATCTTC
ACATCCTTGTGTGGAAGCCCGGATTCTATCGCTTGCTCATATATCTCCCTCGTTCTTGGAACGCCAAATATCTCTGCTGCGCGGGA
AATGTATATCTCATACATCTCCAGCCTCTGCCCTTCTGGAACCTTTTTGGTGGCTTCTTCGTAGACTTTCATGGCTCGCTTGGCCA
GACCGTAATCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_198226 pre-mRNA-splicing factor SYF1 [Arabidopsis thaliana] | 683 | 2e-069 |
| XP_002872326 hypothetical protein ARALYDRAFT_489660 [Arabidopsis lyrata subsp. lyrata] | 672 | 3e-068 |
| XP_002521433 XPA-binding protein, putative [Ricinus communis] | 469 | 1e-044 |
| XP_002305003 predicted protein [Populus trichocarpa] | 468 | 1e-044 |
| CAN65069 hypothetical protein VITISV_003952 [Vitis vinifera] | 449 | 2e-042 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5KH46 Pre-mRNA-splicing factor SYF1 | 324 | 3e-029 |
| Q4P7S1 Pre-mRNA-splicing factor SYF1 | 324 | 3e-029 |
| Q5BH69 Pre-mRNA-splicing factor syf1 | 322 | 5e-029 |
| Q52DF3 Pre-mRNA-splicing factor SYF1 | 315 | 3e-028 |
| Q7SAK5 Pre-mRNA-splicing factor syf-1 | 314 | 4e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LKU3 Putative uncharacterized protein T32B20.g | 683 | 1e-069 |
| B9S614 XPA-binding protein, putative | 469 | 7e-045 |
| B9H231 Predicted protein | 468 | 1e-044 |
| A5AZ61 Putative uncharacterized protein | 449 | 2e-042 |
| A3BMR2 Putative uncharacterized protein | 441 | 1e-041 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G28740.1 transcription-coupled DNA repair protein-related | 684 | 5e-072 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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