RadishBase

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Information for unigene UN22006

FASTA Sequence

Unigene ID: UN22006	Length: 1069		SNP
ACCAAAAATGAGTCCACTCGTCACTCATGTAACATGCATTATACAATAGTGTTGCCGTTTTAGTGTCAACTTTTGTTACTGAATGA AATGGGAGGAAGAGTAGAGATAAAGACAAAGAGACAAGTAGTGGTAGTGCAATATTAGCTCTCAGCTAAAGCTGGAAACTATTTTA TCAGTAAAAACCAGAAGTAATCGTTTTCTAAGGATTAAAGGAACTTATCACAACCATCTTTTAAGCCCAATGTGTTTCTTCTTCTT AAGCCTTCACTAGAGAGTGGAAAGAGCGAGAGACAAGAGAAGCAGAGAAATTACAAAATGGAGCAGGCCTTTTGTGCTTTGCTCTT CTTTTTCTTCTGCTTTGGAGGTTGAAGTACCACTCTGATCGCTGCATCAAACACCCCCTTCACGTTCTGCTGTGACTTTGAACTGC ACTCAATGTAGGAAGGAGCTCCAATTAGCTTCATTAATTCCTCTCCCTGCACAGTGGTAATAGGTACAGCACCAGGGTGGTCAACG AAGAACTGTTTGTCATCCCTAAGATCTAGTTTGGTTCCAACAAGAACAATAGGGACACCAGGGGCATAGTGGGTCAGCTCTGGGAT CCACTTCTTGGAGACGTTCTCATAACTAGCCTTACTGATAAGAGAGAAGGCTAAGATGAAAACGTCAGCACCGCGGTAACTCAAGG GTCTCAATCTGTTATAATCCTCCTGCCCGGCGGTATCCCACAAGCCAAGGTTGATAGTGGCTCCGTTAACAACAACATTAGCGCTA AAGTTATCGAAAACGGTGGGAACATAATCCGTAGGGAAAGTGTTGCTGGTGTAAGAGATGAGGAGACAGGTTTTACCCACTGCTCC GTCACCGACGGTCACGCACTTTATGAACCTTGATGCGCTCATTTCTTAAAAATCCAACCCCCTCAGATCTACTACTACCACACCTC ACGAACCAACACCCTCTTCAATTTTACCTATCTCTAAAAACCCTAGAAAAATGCGATCAATGATATGATGAATCGAGAGAGAGGAA GTAGGAAAGTGACTGAGCCACAAATTTATGCCGTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAO11654 putative ROP family GTPase [Brassica napus]	1007	5e-107
NP_195320 Rac-like GTP-binding protein ARAC6 [Arabidopsis thaliana]	994	1e-105
NP_179371 Rac-like GTP-binding protein ARAC1 [Arabidopsis thaliana]	990	4e-105
XP_002867045 hypothetical protein ARALYDRAFT_491041 [Arabidopsis lyrata subsp. lyrata]	990	4e-105
XP_002331752 predicted protein [Populus trichocarpa]	987	1e-104

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SBJ6 Rac-like GTP-binding protein ARAC6	994	6e-107
Q38902 Rac-like GTP-binding protein ARAC1	990	2e-106
Q35638 Rac-like GTP-binding protein RHO1	981	2e-105
Q39435 Rac-like GTP-binding protein RHO1	978	5e-105
P92978 Rac-like GTP-binding protein ARAC11	974	1e-104

TrEMBL top hits (Blast detail)	Score	e value
Q8GUU7 Putative ROP family GTPase	1007	3e-107
B9MXD5 Predicted protein	987	7e-105
B9SYU4 Rac gtpase, putative	983	2e-104
B0L6Y1 RAC-like small GTPase	981	3e-104
B9VI82 Rac/Rop-like small GTPase	975	2e-103

Arabidopsis top hits (Blast detail)	Score	e value
AT4G35950.1 ARAC6 (ARABIDOPSIS RAC-LIKE 6); GTP binding	995	4e-108
AT2G17800.1 ARAC1; GTP binding	991	1e-107
AT2G17800.2 ARAC1; GTP binding	991	1e-107
AT3G51300.1 ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding	975	9e-106
AT4G35020.1 ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase	927	3e-100

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	5			33%


12	2			13%


11	2			13%


6	5			33%


9	1			7%

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