RadishBase

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Information for unigene UN22011

FASTA Sequence

Unigene ID: UN22011	Length: 870		SNP
TTTTTTGAAAATCCCAATCACGCTCTTCTCCAGAAAAAAAAAAAGAAAAAAAAGAGAGAAAAAAAAAAAAAGGAAGGGTTTTAACA ATGGCGAGAAGACCGGAAGAAGTGTACGACTACTTGTTTAAAGTGGTTCTCATCGGAGACTCCGGTGTCGGCAAGTCGAATCTCCT CTCTAGATTCACTCGCGACGAGTTCTGCTTGGAATCCAAATCTACCATCGGTGTCGAATTCGCTACTCGCACTCTCCAAGTGGAAG GAAGGACTGTGAAAGCGCAGATATGGGACACCGCTGGGCAAGAACGATACAGAGCCATAACCAGCGCCTACTACAGAGGCGCCCTC GGTGCTCTCTTGGTCTACGACGTCACTAAACCAACAACGTTCGAGAACGTTAGCCGGTGGTTGAAAGAGCTCAGAGACCATGCGGA TTCCAACATCGTCATCATGTTGATCGGAAACAAGACGGATCTGAAGCATCTCAGAGCTGTTGCCACGGAGGATGCTCAGAGCTTCG CCGAGAAAGAAGGCTTGTCTTTCATCGAGACGTCGGCTCTCGAGGCGCTGAACGTGGAGAAGGCCTTTCAGACGATTCTCTCGGAG ATCTACAGGATCATCAGCAAGAAATCGATATCTTCGGACCAGGCAGATGCAAATGGTAACGTCAGGGAAGGTCAAACAATCGATGT CGCTGCTGCCTCTTCTGAATCAAACACTAAGAAGCCTTGTTGCTCTTCTTCCTGAAAGGGGCTTATCACACTTCGAAGCCAATATC TATGTATTTCCTTTTACGGCTTGCTTGCATTGTAATATAACTCAAGGATCATTCCTATATGAATTGTGAAATTCAAATGCAAGCAA TTGTTGTCTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001147252 ras-related protein Rab11C [Zea mays]	1035	2e-110
NP_172434 Ras-related protein RABA2a [Arabidopsis thaliana]	1023	5e-109
XP_002892514 hypothetical protein ARALYDRAFT_888208 [Arabidopsis lyrata subsp. lyrata]	1013	7e-108
XP_002526431 protein with unknown function [Ricinus communis]	942	1e-099
XP_002264444 PREDICTED: hypothetical protein [Vitis vinifera]	934	1e-098

Swiss-Prot top hits (Blast detail)	Score	e value
O04486 Ras-related protein RABA2a	1023	2e-110
Q40193 Ras-related protein Rab11C	824	2e-087
Q39434 Ras-related protein Rab2BV	820	7e-087
Q96283 Ras-related protein RABA2c	818	1e-086
Q40523 Ras-related protein Rab11A	799	2e-084

TrEMBL top hits (Blast detail)	Score	e value
B6SNF6 Ras-related protein Rab11C	1035	1e-110
B9SKB2 Putative uncharacterized protein	942	8e-100
B9N741 Predicted protein	929	3e-098
A9PCE2 Predicted protein	923	1e-097
C6TJF9 Putative uncharacterized protein	923	1e-097

Arabidopsis top hits (Blast detail)	Score	e value
AT1G09630.1 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding	1027	6e-112
AT3G46830.1 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C); GTP binding	818	1e-087
AT1G07410.1 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding	813	4e-087
AT5G59150.1 ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding	810	9e-087
AT5G60860.1 AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding	752	5e-080

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	3			43%


6	2			29%


10	2			29%

Unigene Members	Member information