Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN22013

FASTA Sequence
Unigene ID: UN22013Length: 604  SNP
GGAAGTGTGTTAAGAGGCGAAAAGAGTTATTTAATGGCGACGTCAGGGTTTAAGCATTTGGTGGTTGTGAAGTTTAAGGAAGATGC
TAAGGTTGATGAGATCTTGAAGGGCTTGGAGAATCTTGTTTCTCAAATTGATTCTGTCAAATCCTTTGAATGGGGAGAAGATAATG
AGAGTCACGAGATGCTTAGACAAGGATTCACTCATGCTTTCTCGATGACTTTTGAGAATAAAGATGCTTACGTTTCTTTCACAAGC
CATCCTCTTCACGTTGAGTTCTCTGCCGCTTTCACCGCTGTCATCGACAAGATTGTGGTCATGGACTTCACCGTCGCCGCCGTCAA
ATCTCCCGTTATAGCACCGTGAAACTCATCGTACTTGTTTCTTAATTAATCTCGTTTTATAATTTAATCGAGGTTTGTGAGTTGTT
TCGGTTTATGTAATTCTGTTGGTTTAAGTATGTTTTGGTTTGATTCGTTCAATTCCGGTTCGGAATAATAAAAAACTGGTTTGGTT
GGTAGTTTGGTTATTGTTTACTTTGAAGTGAAAATAAATATATAATCTTGTGTTAAATGGAATTCAAGTGAGTTATCTGTTTTTTT
TA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568422 stress responsive A/B Barrel domain-containing protein [Arabidopsis thaliana]5071e-049
XP_002872009 hypothetical protein ARALYDRAFT_910252 [Arabidopsis lyrata subsp. lyrata]5062e-049
BAD93607 hypothetical protein [Cucumis melo]3583e-032
XP_002533607 conserved hypothetical protein [Ricinus communis]3493e-031
XP_002268144 PREDICTED: hypothetical protein [Vitis vinifera]3484e-031

Swiss-Prot top hits (Blast detail)Scoree value
Q9FK81 Uncharacterized protein At5g225805077e-051
Q9LUV2 Probable protein Pop32254e-018

TrEMBL top hits (Blast detail)Scoree value
Q58A16 Putative uncharacterized protein 7E10 (Fragment)3582e-032
B9T5T8 Putative uncharacterized protein3492e-031
A5C6X0 Putative uncharacterized protein3483e-031
A9PCJ3 Predicted protein3313e-029
B9MYJ1 Predicted protein3313e-029

Arabidopsis top hits (Blast detail)Scoree value
AT5G22580.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: HS1 (HEAT STABLE PROTEIN 1) (TAIR:AT3G17210.1); Has 231 Blast hits to 231 proteins in 57 species: Archae - 0; Bacteria - 89; Metazoa - 0; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).5077e-052
AT3G17210.1 HS1 (HEAT STABLE PROTEIN 1)2254e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
105  28%
 
127  39%
 
94  22%
 
62  11%

Unigene MembersMember information