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Information for unigene UN22042

FASTA Sequence
Unigene ID: UN22042Length: 1516 SSR 
GGGCAGATTCTCTCTCTCTCTCAAAAAAAGCTAAAATGTGGCGATTCTCTGTTTCGACGCTGCTCTTCTCTTATCTGGCCGTTACT
TTCCTGTCCATCTCTTCATCGTCTTTGGGTGATTCGGAGGCGACATGCTCTGGAATAGTCCCGTTACCGAACCGGAAGGATAAGAT
ATCGATAACAGAGTTTGGCGGCGTGGGAGACGGCACGACGGTGAACACGAACGCCTTTAGGGAAGCGATTTATAGAATACAGCACC
TTAAGAGGAGAGGAGGCACGCTCCTGTACATACCTCCGGGAGTGTTTCTCACGGAGAGCTTCAATCTCACCAGCCATATGACTCTC
TTCTTGGCTAAAGGCGCTGTCCTTAAAGCTGTTCAGGATACAGGGAACTGGCCATTGATTGGTCCTTTGCCATCTTATGGAAGAGG
GAGGGAGTTACCAGGGGCACGGTATATGAGTTTTATTCATGGCGATGGCCTTCGTGATGTAGTCATCACTGGAGAAAACGGGACAA
TAGACGGTCAAGGAGAAGTGTGGTGGAACATGTGGCGCAGTAGAACTCTAAAGTTCACTAGACCGAATCTAATCGAGCTCAAAAAC
TCTAAGGAGATCATAATTTCCAATGTTGTTTTCCAGGATTCACCCTTCTGGAACATTCATCCTGTGTATTGCAGCAATGTTGTCAT
CCATCACGTTACCATCTTAGCTCCACAAGATTCGCCCAACACTGATGGAATCGATCCAGATTCCAGCTCCAACGTCTGCATAGAAG
ACTCCTACATCTCAACAGGAGACGACCTTGTTGCCGTAAAAAGCGGTTGGGACGAGTACGGAATAGCTTTTGGCCGTCCAAGCTCA
AACATAACGATCCGTCGCATCACAGGATCGACCCCTTTCGCAGGTATCGCTATAGGAAGCGAAACATCAGGAGGTATCAAGAACAT
CGTAGCAGAACATATCAGTCTCTCCAATATGGGGGTTGGAGTCAACATCAAGACAAACATTGGTCGTGGAGGATACATAAAAAACA
TTAAAATCTCCAACGTTTATGTCGAAAACGCAAGGTACGGGATCAAGATCGCTGGCGACACGGGAGATCACCCTGACGCGAATTAT
AACCCGAACGCGCTCCCAGTCGTTGAAGGAATACATATCAATAACGTTTGGGGAGTTAACGTTCGAAACGCTGGATCCGTTCAAGG
CCTTAAGGGTTCGCCTTTTACAGGGATATGTTTGAGTGAGATTAACCTACGTGGAAGCTTCAACTCGGACCGGTCGTGGAAGTGTT
CAGATGTTATTGGAACTTCGCTTAAGGTCAGTCCTTGGCCGTGCTCGGAGCTGAGAACTACTGGCGGTTCTTATTCGTGTTCTTCC
ACTTTCTAAAACCTTCTGAGCACTTTTTTTCCCTCCTTGATTCGTTTTCTAAACCTAATTATTCACGAATATGTAGTTCCTCTCCA
CCAATATGTTTGTATCTAAACTCATAAAGTTATTATATAAATGGATACAAATTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867688 glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata]21001e-233
NP_194113 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]20831e-231
ACC91250 glycoside hydrolase family 28 protein [Arabidopsis halleri]20785e-231
CBI34471 unnamed protein product [Vitis vinifera]17641e-194
XP_002509949 Polygalacturonase precursor, putative [Ricinus communis]17489e-193

Swiss-Prot top hits (Blast detail)Scoree value
A7PZL3 Probable polygalacturonase10486e-113
Q9LW07 Probable polygalacturonase At3g157202717e-023
P18192 Endo-polygalacturonase2592e-021
Q9SFB7 Polygalacturonase QRT22322e-018
P27644 Polygalacturonase2304e-018

TrEMBL top hits (Blast detail)Scoree value
Q9SUP5 Putative polygalacturonase20839e-232
B2WS78 Glycoside hydrolase family 28 protein20783e-231
B9RCR5 Polygalacturonase, putative17486e-193
B9GXH4 Predicted protein17031e-187
Q9FJ27 At5g4187015471e-169

Arabidopsis top hits (Blast detail)Scoree value
AT4G23820.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein20844e-234
AT5G41870.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein15477e-172
AT4G33440.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein11793e-129
AT3G62110.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein11571e-126
AT3G16850.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein10512e-114

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  14%
 
72  29%
 
92  29%
 
112  29%

Unigene MembersMember information