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Information for unigene UN22122
| FASTA Sequence |
| Unigene ID: UN22122 | Length: 1140 |
SSR | SNP | GGTAAGAAAGTGAACGTTGGAGCTTTATATTTAGAAGTAATGAAATGGTAAATGTAACAAACCCAATGGCAAAATCTGGTTCATAT
ACTGATTAAAAAAAAAGAAAAGACAGTTATTCTGGTGGGTTTACCAAACACGGGAATATATGTGATAAATCAAACCGATCCTGCAC
AGGTTGAGCCATGAAAGAGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGATGATACACGCTTCACGAGC
ACATGTTCTGGATGTGATAGTTTCAGCTGGCTTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGACAAGGTTTGC
AAGAGTTTCTGGGTCCTTAGCATCCTTGTTGAGTGCTTCAAGGAGTAGTGTTTCAGCTTCATCAAAGTTACCCATTTGCATACAGC
AAACAGCTTTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTGGAAAATGAGATAAGCTTCCTGAATCTTC
GAGCCACCCACTGCCAGGTTAAACCATGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGCATCACCCCAAGCTG
CTTCTCAGCATAATCTGTTCTGTGCATCTTAATGAATATCTGGACGTTCAAGGCATGCAGATCCATAGTTCCTCCAGCATGAGTAT
GCTTGAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCAACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGA
TCTGCCAACCACTCCCTCAAGCTTGAGATGGTTGACTCCTTATTTGCAGGACTCGATAGATACATCGCGAGGAGCTTAACTGCCTG
CAGTGGAGTAGCGGCGGATTCATCGATCTCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGACGAGGCAGT
CGCGTTCCACGGCGTCCTCAGGCGAGAGGTTACGGATCTCGCTGTTGTTGATCGCCGTTTGGTAAGCTCCCAGATAGAACTGGTTT
CTCAGATTGAAGAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCTTTGCTTGCTTGCTTCTTCTTCTTCTTCCTTACTTTAGA
TCTCTATCTCACAGATCCGCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_181030 coatomer subunit epsilon-2 [Arabidopsis thaliana] | 1379 | 4e-150 |
| XP_002893638 coatomer protein epsilon subunit family protein [Arabidopsis lyrata subsp. lyrata] | 1335 | 5e-145 |
| NP_174351 coatomer subunit epsilon-1 [Arabidopsis thaliana] | 1329 | 2e-144 |
| AAM65018 coatomer-like protein, epsilon subunit [Arabidopsis thaliana] | 1329 | 2e-144 |
| XP_002317073 predicted protein [Populus trichocarpa] | 1296 | 2e-140 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O64748 Coatomer subunit epsilon-2 | 1379 | 2e-151 |
| Q9SA78 Coatomer subunit epsilon-1 | 1329 | 1e-145 |
| Q9MAX6 Coatomer subunit epsilon-1 | 1176 | 6e-128 |
| P0C541 Coatomer subunit epsilon-2 | 996 | 4e-107 |
| A2XY73 Coatomer subunit epsilon-2 | 992 | 1e-106 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9I0V9 Predicted protein | 1296 | 1e-140 |
| B9SV80 Coatomer epsilon subunit, putative | 1225 | 2e-132 |
| B7E599 cDNA clone:001-030-H03, full insert sequence | 1172 | 3e-126 |
| B8AU46 Putative uncharacterized protein | 1172 | 3e-126 |
| Q9MAX8 Epsilon1-COP | 1160 | 6e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G34840.1 coatomer protein epsilon subunit family protein / COPE family protein | 1380 | 1e-152 |
| AT1G30630.1 coatomer protein epsilon subunit family protein / COPE family protein | 1330 | 7e-147 |
| AT2G34840.2 coatomer protein epsilon subunit family protein / COPE family protein | 1007 | 2e-109 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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